PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g39070.1
Common NameLOC9266080, Os01g0571800, OsJ_02291, OSNPB_010571800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 126aa    MW: 13306.1 Da    PI: 6.7597
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g39070.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.42.6e-3491111100
            DUF260   1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                       +CaaC++++r +C+++C+lapyfpa++p++f++++ l+G++ +l+ l+a+  ++ +r+++m+s+v+ ++ara dPv+Ga+gvi++lqq+l+++
  LOC_Os01g39070.1   9 PCAACAHQGRpSCPAGCPLAPYFPADRPERFEYANLLYGVDGILRRLEAAgpDPGTRRATMASIVFVSDARAADPVHGAYGVIRNLQQELASV 101
                       7*********9***************************************766667************************************* PP

            DUF260  91 kaelallkee 100
                       kae+a+++++
  LOC_Os01g39070.1 102 KAEIAAIRQK 111
                       *****99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.0218112IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-289109IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MADPTPPPPC AACAHQGRPS CPAGCPLAPY FPADRPERFE YANLLYGVDG ILRRLEAAGP  60
DPGTRRATMA SIVFVSDARA ADPVHGAYGV IRNLQQELAS VKAEIAAIRQ KQQQAQPPPP  120
PEDGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-1221071106LOB family transfactor Ramosa2.1
5ly0_B1e-1221071106LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA2ZUK5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g39070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g39070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640499.12e-85LOB domain-containing protein 22
TrEMBLA0A0E0FNC44e-84A0A0E0FNC4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0MY994e-84A0A0E0MY99_ORYRU; Uncharacterized protein
TrEMBLA2WRM54e-84A2WRM5_ORYSI; Uncharacterized protein
TrEMBLA2ZUK54e-84A2ZUK5_ORYSJ; Os01g0571800 protein
STRINGORUFI01G22650.17e-85(Oryza rufipogon)
STRINGOS01T0571800-007e-85(Oryza sativa)
STRINGONIVA01G22650.17e-85(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153751118
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-18LOB domain-containing protein 22