PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g39040.1
Common NameB1129G05.8, LOC107278430, OsJ_02288
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 357aa    MW: 38510.3 Da    PI: 4.6432
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g39040.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.95.7e-3222121199
            DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +CaaCk+lrr+C+++ C lap+fpa+qp++++ v+++FG+++vl+l +++ +e  +d++ss+vyeAea+ rdPv G +gv+ +l+ ++ +++a
  LOC_Os01g39040.1  22 RCAACKFLRRACSPEeCRLAPHFPASQPERLQSVERVFGMRKVLELAHKAGPEYLDDILSSIVYEAEAWGRDPVWGPTGVVGALELEIGTARA 114
                       6***********9877***************************************************************************** PP

            DUF260  93 elallke 99 
                       +la+l+ 
  LOC_Os01g39040.1 115 DLAVLQG 121
                       **99876 PP
2DUF260112.43.2e-35174265191
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       +CaaC++l r+C ++C lapyfpa q p++f nvh+lF+ +nvl++++++++eer+d+m+++vyeA+a+ardP yG++gv+++l+++l++++
  LOC_Os01g39040.1 174 RCAACRYLSRSCWPECLLAPYFPAGQpPAQFGNVHRLFRLNNVLRMMEETRREERDDLMAAIVYEADAWARDPRYGVAGVVRSLTNELARVR 265
                       6***********************9978************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.82321123IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-2822120IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089119.221173275IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-28174265IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MADPSRSTSS GAAKKPSPRN PRCAACKFLR RACSPEECRL APHFPASQPE RLQSVERVFG  60
MRKVLELAHK AGPEYLDDIL SSIVYEAEAW GRDPVWGPTG VVGALELEIG TARADLAVLQ  120
GQDQDQPPAV ATLPEPELVV HPPTMAQDES KPSSTTSSSS GTTTTTTKKK NKPRCAACRY  180
LSRSCWPECL LAPYFPAGQP PAQFGNVHRL FRLNNVLRMM EETRREERDD LMAAIVYEAD  240
AWARDPRYGV AGVVRSLTNE LARVRLDEIA FHLLGTDETY DGYKEEDALA VDPVSGAQAG  300
IGVLGGSGAD LQENTGILLG ADEPGPGELA VDPIKDVFDI DRLLAVDDDL SSGTQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-212327212108LOB family transfactor Ramosa2.1
5ly0_B9e-212327212108LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ657B9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g39040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g39040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638289.10.0uncharacterized protein LOC107278430
RefseqXP_025882396.10.0uncharacterized protein LOC107278430
TrEMBLQ657B90.0Q657B9_ORYSJ; Uncharacterized protein
STRINGORGLA01G0166300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2318866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.16e-21LOB domain-containing protein 25