PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g39020.1
Common NameB1129G05.5, HSF01, HSFA6B, LOC4326351, Os01g0571300, OsJ_002223
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 403aa    MW: 43912 Da    PI: 7.4725
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g39020.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.15e-32941882103
                       HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
      HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                       F+ k+ye++ d++++ ++sw    +g sfvv+d++ +a  vLp++Fkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  LOC_Os01g39020.1  94 FVAKTYEMVADAATDAVVSWGpgGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDR---------WEFANEAFLAGQKH 177
                       9********************655679*****************************************99.........************** PP

                       XXXXXXXXXXX CS
      HSF_DNA-bind  93 llekikrkkse 103
                       ll++ikr++ +
  LOC_Os01g39020.1 178 LLKNIKRRRVS 188
                       *******9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-5390185IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.24E-3090185IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-3490185IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-1794117IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-2894185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-17134146IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340135159IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-17147159IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MLKPQTPRAR RAAHPNSHMA SSSSSSSLCR LLIPRPTTRR FSGGGGEGGM AAAAPVKREV  60
KPEAGEGWGG GDLGVVPPPP RPMEGLGEAG PAPFVAKTYE MVADAATDAV VSWGPGGSGA  120
SFVVWDPHAL AAGVLPRFFK HANFSSFVRQ LNTYGFRKVT PDRWEFANEA FLAGQKHLLK  180
NIKRRRVSKP LVDSQLRNKA SVVFGQPEAP GEVVSLKRDR AALRAEVIML KQQYNACKSQ  240
LIAMEEMVRN IERRQQQTIG FFAKVLTNPA FVQQVLLNYV NKNGLRGAAK RQRLMENEEQ  300
HADSPLNKGM EAASVMEADV SPGSTGCGTV GKVETTPMCN FQNIENMCDD VWEELDALPE  360
TGMEQEEKAG IGSFDVEEFV GRPCGWVDDC PYLVEPMQFV EH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-236918510129Heat shock factor protein 1
5d5v_B7e-236918510129Heat shock factor protein 1
5d5v_D7e-236918510129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178184LKNIKRR
2182186KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.519160.0callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329742890.0
Expression AtlasQ657C0-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g39020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g39020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642710.0AK064271.1 Oryza sativa Japonica Group cDNA clone:002-105-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631502.10.0heat stress transcription factor A-6a
SwissprotQ657C00.0HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLA0A0E0FNB60.0A0A0E0FNB6_ORYNI; Uncharacterized protein
TrEMBLA0A0E0MY820.0A0A0E0MY82_ORYRU; Uncharacterized protein
STRINGORUFI01G22600.10.0(Oryza rufipogon)
STRINGOS01T0571300-010.0(Oryza sativa)
STRINGONIVA01G22600.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Representative plantOGRP1432844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.18e-72heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  3. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]
  4. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]