PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g38610.1
Common NameOs01g0566800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 467aa    MW: 47180.7 Da    PI: 5.1513
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g38610.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.3e-07361401954
                       HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  LOC_Os01g38610.1 361 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 401
                       69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-13358412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-11358406No hitNo description
Gene3DG3DSA:4.10.280.109.1E-11360410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-5361401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDRGFNEMIL SESVWNGGGG GGDGDGGAVV LPPEVGGVNA VDGSGMTMLE RLVLDEALAA  60
AILELQGIQA PGCGGGGGKV AVVPPPTAGD GGVEAAVAFA AMATGTPAYA DVDADVLQRQ  120
RQHHHRHQGA MGMAAEYDVA PATPAVTLSA VPPPPPPPAF ATAAASVDGG GAMDATVFSG  180
IGNDDVVDAV SATVAMTTAT ATTSQCERVR GGGGGGGCGR KQRRPGRKRK AAEPTAAAAA  240
ADMSSQDNPL CSLLASNTAG ADGGIQIAFS TSAPASKRAK PSLSSSSSSI SFDGRGPGGN  300
CGGGGGDDPL YEPDTEALAQ VKEMIYRAAA MRPVTLGAED AGERPRRRNV RISSDPQTVA  360
ARQRRERISE RLRVLQKLVP GGAKMDTASM LDEAANYLRF LKSQIRELQT LDRRNYPNAA  420
MSINTAAATT MATSSSPTYN NSNAAMPAFA FPETLGCGGG GVEQLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361366RQRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.212310.0flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975970390.0
Expression AtlasQ0JLV0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g38610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g38610
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031410.0AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032960.0AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629736.10.0transcription factor LATE FLOWERING-like
RefseqXP_015629741.10.0transcription factor LATE FLOWERING-like
TrEMBLQ0JLV00.0Q0JLV0_ORYSJ; Os01g0566800 protein (Fragment)
STRINGOS01T0566800-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Representative plantOGRP1289345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-34bHLH family protein