PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g36220.1
Common NameLOC4326871, Os01g0542700, OSJNBa0062A24.41, OSJNBa0065J17.8, OSNPB_010542700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 183aa    MW: 18967.8 Da    PI: 10.0686
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g36220.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.4e-1142100563
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       ++ +rk++NR++A+rsR+RK+++++eL+  v++L a N aL   + e    +a++++e+
  LOC_Os01g36220.1  42 RKRKRKESNRLSAQRSRARKQQQLDELAGQVAALRARNGALGLAAREAARRCAAVRAEN 100
                       6789*************************************999999999998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.7E-1238102IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.1854082IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.4E-94082No hitNo description
SuperFamilySSF579593.7E-84282No hitNo description
PfamPF001702.3E-84299IPR004827Basic-leucine zipper domain
CDDcd147027.68E-164382No hitNo description
PROSITE patternPS0003604560IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MASPGVVCTT VTPTSSAGSD QVVAGGGEAA RRPVAPAVME ERKRKRKESN RLSAQRSRAR  60
KQQQLDELAG QVAALRARNG ALGLAAREAA RRCAAVRAEN ELLRARSVEL AARLDSLTDL  120
AQCLHDAAAA SSFAAAPPMM MAGAATAFPT GAVGAAAGFM MPQLPPPLLD ATTMGMHCNY  180
YY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14146RKRKRK
24147RKRKRKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1007181e-38root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166381731e-38
Expression AtlasQ8RYP6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g36220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g36220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1105260.0AK110526.1 Oryza sativa Japonica Group cDNA clone:002-167-H10, full insert sequence.
GenBankAP0042330.0AP004233.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0065J17.
GenBankAP0043610.0AP004361.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641337.11e-127ocs element-binding factor 1
TrEMBLA0A0D3EPW71e-125A0A0D3EPW7_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YA691e-125A0A0D9YA69_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FMU51e-125A0A0E0FMU5_ORYNI; Uncharacterized protein
TrEMBLQ8RYP61e-125Q8RYP6_ORYSJ; Os01g0542700 protein
STRINGOGLUM01G22270.11e-126(Oryza glumipatula)
STRINGOS01T0542700-011e-126(Oryza sativa)
STRINGONIVA01G21240.11e-126(Oryza nivara)
STRINGOBART01G18790.11e-126(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137572428