PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g32890.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 510aa    MW: 55599.4 Da    PI: 8.0087
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g32890.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57341.83.1e-13257347397
            DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                       f r w+ +Dei++L +l+d   + g  p++     f+e v++    ++++s++ +K+r+LK+++++ v         +++k+hd +  els  
  LOC_Os01g32890.1 257 FGRKWNGNDEIMILEALVDQIRSGGNVPQEpGHPLFHELVQRLEGRTFNHSDVRDKVRSLKRRYNDVVLS-----GLAITKDHDLQLHELSCE 344
                       6799****************999999998845556777777777789********************999.....789*************** PP

            DUF573  95 iWg 97 
                       iWg
  LOC_Os01g32890.1 345 IWG 347
                       **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-12257347IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MRRRSPPPAA AQPPRPPTRA AESGEEGGDP GKDEVAAPPK GDSALPRSGS GFGSGNAAAP  60
DGPAKSPMKP KKRVTAPPSS DHGSRENLAA GSPSNEVPTP QGDDAAQEDD LPESPPKSKK  120
NRKKKKKALR AGDSGKVAAP DDPAEPTRPQ QDVGEVDGRL AESEQEVPPN AGKAKKKASA  180
QARKKPSAKQ HAAAQEEEDG DLMAEAEEEV APWQGDEEDG KGPLPQRKSK RVAALSGSIC  240
PPDPKRAKIV DAQKPGFGRK WNGNDEIMIL EALVDQIRSG GNVPQEPGHP LFHELVQRLE  300
GRTFNHSDVR DKVRSLKRRY NDVVLSGLAI TKDHDLQLHE LSCEIWGRSV AHAGDDKQRC  360
LARDEQSSLA RDEQKSFARD EEKSLARDEQ SSLARDEQKS FARDEKSLAR DEEKSLASDE  420
QRSFDDMCKQ FPLLAKEIKV LMEGQPAIME LFPRLDGDQV VAIEKKLENL RWIDMKRKKK  480
MAVKMAKIRK GLIYKLEGAA ILADGNMIH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126KKNRKKKKK
2172184KAKKKASAQARKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.374030.0panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329687750.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g32890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g32890
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029700.0AP002970.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504D03.
GenBankAP0032130.0AP003213.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0054L14.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644071.10.0basic salivary proline-rich protein 2
TrEMBLA0A0E0MX600.0A0A0E0MX60_ORYRU; Uncharacterized protein
STRINGORUFI01G19540.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17455910
Representative plantOGRP1296823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-07DNA-binding storekeeper protein-related transcriptional regulator