PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g32770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 331aa MW: 35019.8 Da PI: 5.3757 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.8 | 5.5e-31 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++q+q + LOC_Os01g32770.1 4 SCNGCRVLRKGCSEGCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAGPDHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGQWQAC 96 6******************************************************************************************** PP DUF260 89 qlkaelallk 98 q+++e++l + LOC_Os01g32770.1 97 QAAVEAVLKG 106 ****998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.53 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-25 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSEGCT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAGPDH 60 LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GQWQACQAAV EAVLKGDPVV QVSSEAAAAA 120 QATPPLRAYD IRHVSKDAEA DAAANLLRVA RGGRTRFKRA SSSSNSKHGA KLAGAAAAKR 180 AASPSSSSPT HETEPEAVVV VGDHDDDHHH PALSHEVHEE SAGSHDHDDD DHVDDGDNND 240 MAIADVTPPR AGSEDTEVET GSHVSQAEQS PVPVEHEEGE EEEVGLELTL GFQPLVVRAS 300 RRPSSAEARC DLSGLSAESS RIGLRLELPA * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.22577 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116632546 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g32770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g32770 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003077 | 0.0 | AP003077.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0520B06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628244.1 | 0.0 | LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 9e-81 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A0E0MX47 | 1e-175 | A0A0E0MX47_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G19440.1 | 1e-175 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 4e-70 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g32770.1 |