PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g28050.1
Common NameLOC107275546, Os01g0378400, OSNPB_010378400, P0416G11.36
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 266aa    MW: 28832.2 Da    PI: 8.1439
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g28050.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.81.7e-09592033128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev..ikev.diykvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknra.......tks 80 
                        Gf+  Pt  elv ++L+++++g ++   +v  i    d   + P dL +    +++ + + e ++F++r++  + + r++ a        + 
  LOC_Os01g28050.1  59 TGFQDTPTVGELVLRHLRPRLRGFHCADGDVpvIGVRdDPAAAAPLDLVArhggAADRR-RgEAFYFVRRRRCRRPNVRRTVAeggggggGAG 150
                       69999*******************9766565424444699********74334322223.258899999988776555554445666665558 PP

               NAM  81 gyWka..tgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                       g Wk+  tg+ k+v++ +  + + k+   fy   +g + ++    Wv+ ey++
  LOC_Os01g28050.1 151 GLWKKswTGSGKSVTDLGVVVPWSKTCYCFYrrdEGGRLSTFGGGWVLAEYEI 203
                       99**645899******888888999999***43333444445679******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.1357230IPR003441NAC domain
SuperFamilySSF1019416.02E-2458229IPR003441NAC domain
PfamPF023653.6E-759203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAICAAAADH SRASPSSAAT QPTTICWRPS KVKEEVEEDG MVVDPPDDAS EASDNLRATG  60
FQDTPTVGEL VLRHLRPRLR GFHCADGDVP VIGVRDDPAA AAPLDLVARH GGAADRRRGE  120
AFYFVRRRRC RRPNVRRTVA EGGGGGGGAG GLWKKSWTGS GKSVTDLGVV VPWSKTCYCF  180
YRRDEGGRLS TFGGGWVLAE YEITEPGTYR RADEEEDDDD YWVLCHVRKT ASKKRKRNRC  240
DEAVAARAVA GTESKSYLLC GLTAN*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5ZDF4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g28050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g28050
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029680.0AP002968.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0416G11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637825.10.0uncharacterized protein LOC107275546
TrEMBLQ5ZDF40.0Q5ZDF4_ORYSJ; Os01g0378400 protein
STRINGOGLUM01G18710.10.0(Oryza glumipatula)
STRINGORUFI01G17760.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173721010