PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os01g23780.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

M-type_MADS

Protein Properties

Length: 279aa MW: 28862.6 Da PI: 5.8514

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os01g23780.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	24.9	2.6e-08	6	39	10	43
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsst 43 t+ k ++ ++ A ELS+LC+++va++ ++ LOC_Os01g23780.1 6 DATYGKMQESLMEEARELSILCGVDVALLCAGGP 39 57999************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.503	1	34	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-7	6	40	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.1E-7	7	37	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MKMEEDATYG KMQESLMEEA RELSILCGVD VALLCAGGPG TGDGDGGGAV STAEVAVWES 60 EEGVLASYRA ILPRPEAHTL RECLELKLAR ERAKLAMLHQ YGGGGAGAAR VHGRGDGGRD 120 REAGGAALGL LDDGNAVNGD GGGPDLLHIP IQPGAPDSVV VPVISHAQPI ASSTGADFAD 180 APNGFLAMDV GGSLIKSATT QRSARPMGSS SGTPTMANLD QIHYLVGGSA FSIDALESPT 240 LLVRCKTLRI AIQFMLPLRH GRFRANVPSN HRRTETKS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os01g23780.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os01g23780

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003331	0.0	AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBank	AP003337	0.0	AP003337.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1111_G12.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0IT08	1e-127	A0A0E0IT08_ORYNI; Uncharacterized protein
STRING	ONIVA10G11850.1	1e-128	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP23165	5	5

Link Out ? help Back to Top
Phytozome	LOC_Os01g23780.1