PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g21120.1 | ||||||||
Common Name | B1011A07.39, LOC4327287, Os01g0313300, OSNPB_010313300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 22302.2 Da PI: 7.1866 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 49 | 99 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+W+AeIrdp+ + r++lg++ tae Aa+a+++a+++++g+ LOC_Os01g21120.1 49 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 99 6********.**********75....44*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.9E-37 | 49 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-32 | 49 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.487 | 49 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-22 | 49 | 107 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.82E-17 | 49 | 108 | No hit | No description |
PRINTS | PR00367 | 3.9E-11 | 50 | 61 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 50 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MCGGAIIYDY IPARRRLCAS DFWPDADDSD PHTPAPEKPP RAKRERKNQY RGIRQRPWGK 60 WAAEIRDPVK GVRVWLGTYP TAEAAARAYD RAARRIRGAK AKVNFPNDFG AAPAPAAAAA 120 KAVPRVAPTP AVLPPPKMEA VSEGAGACSS DEVKELSEEL LAYENYMSFL GIPYMEGGAA 180 SAAGAEEAAA PAGLWTFEDY ELPSLAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-22 | 49 | 106 | 5 | 63 | ATERF1 |
3gcc_A | 4e-22 | 49 | 106 | 5 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.8031 | 0.0 | callus| flower| leaf| panicle| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 66914518 | 0.0 | ||||
Expression Atlas | Q8LQ87 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g21120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g21120 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111775 | 0.0 | AK111775.1 Oryza sativa Japonica Group cDNA clone:J023075G11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630785.1 | 1e-146 | ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | Q8LQ87 | 1e-145 | Q8LQ87_ORYSJ; Os01g0313300 protein | ||||
STRING | OS01T0313300-01 | 1e-145 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11547 | 25 | 40 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g21120.1 |
Entrez Gene | 4327287 |