PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g19330.1 | ||||||||
Common Name | LOC4326726, Os01g0298400, OsJ_01424, OSJNBa0025P13.33, OSNPB_010298400, P0487H02.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 32507 Da PI: 5.9876 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 2.9e-15 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l+ +v+ G g+W+ ar g++Rt+k+c++rw++yl LOC_Os01g19330.1 23 RGPWTVEEDAVLAGYVAANGEGRWNELARAAGLRRTGKSCRLRWLNYL 70 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.3e-17 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T++E++l+++++ ++G++ W++Ia++m+ gRt++++k++w++ LOC_Os01g19330.1 76 RGDFTPQEQLLILELHFRWGNR-WSRIAQHMP-GRTDNEIKNYWRT 119 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.168 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-30 | 21 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-11 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-21 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.00E-8 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 22.453 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-16 | 76 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.73E-11 | 79 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000032 | anatomy | tetrad of microspores | ||||
PO:0001029 | developmental stage | E tetrad stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence Send to blast |
MDAPCGWTTS AAAAVAEEED VRRGPWTVEE DAVLAGYVAA NGEGRWNELA RAAGLRRTGK 60 SCRLRWLNYL RPDVRRGDFT PQEQLLILEL HFRWGNRWSR IAQHMPGRTD NEIKNYWRTR 120 VQKHAKQLGC DVNSRQFKDV MRHLWMPRLV ERIHAAAASS ERAAPPPCAA APASHSGMCH 180 SPDPSTTTSS MAGSSVTHGE QFPSSTNHHL MTMASVTTAA ADWSSEQCGS GSATSTSVGI 240 SYDMFEGSWS ELLARAYDDD GADSSLLPDF QMADTGDNCW WSNLEDIWSQ QPY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-23 | 20 | 117 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.67955 | 0.0 | callus| leaf |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 116010980 | 0.0 | ||||
Expression Atlas | Q93V35 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g19330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g19330 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK241615 | 0.0 | AK241615.1 Oryza sativa Japonica Group cDNA, clone: J065186D02, full insert sequence. | |||
GenBank | AP002883 | 0.0 | AP002883.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0487H02. | |||
GenBank | AP003140 | 0.0 | AP003140.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630818.1 | 0.0 | transcription factor MYB2-like | ||||
TrEMBL | Q93V35 | 0.0 | Q93V35_ORYSJ; Os01g0298400 protein | ||||
STRING | OS01T0298400-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G48000.1 | 2e-79 | myb domain protein 112 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g19330.1 |
Entrez Gene | 4326726 |