PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g19050.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 960aa    MW: 110625 Da    PI: 8.8596
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g19050.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.21.3e-18212292190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fYn YA + GF +r +k +k+++n+  t+r+ +Cs +g++ ++kk          + r+gC a++k+++++  + w vtk+++ HnH++ 
  LOC_Os01g19050.1 212 NFYNVYAVSKGFGIRLDKDRKNTKNQ-RTMRQICCSHQGRNPKTKKP---------SVRIGCPAMMKINRSRaGSGWSVTKVVSAHNHPMK 292
                       6********************97777.899*********99887655.........9**************99999************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-14212292IPR004330FAR1 DNA binding domain
PfamPF105512.6E-33414507IPR018289MULE transposase domain
PfamPF044341.4E-5696729IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.299696732IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-7707734IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 960 aa     Download sequence    Send to blast
MPRAAPRRRR PAPPPLRCRH TENVNERTNV NENKNERTNV NEPTNVNENE RTNVNENKVN  60
ERERERCRTN MNEPTNVNVK CNYRQVVGGE EWEILMDERN PTMDIVDGIS QSVHDSQPDG  120
GQSSRVAMEE DVPSRVGSHD SGHGIPETRN LVPSLDWTEG NPYEKEGAGI PMERMVVDNV  180
DSSAVIPPEY ADPQILTPML GQRFKTERDA YNFYNVYAVS KGFGIRLDKD RKNTKNQRTM  240
RQICCSHQGR NPKTKKPSVR IGCPAMMKIN RSRAGSGWSV TKVVSAHNHP MKKSVGVTKN  300
YQSHNQIDEG TRGIIEEMVD SSMSLTNMYG MLSGMHGGPS MVPFTRKAMD RLAYAIRRDE  360
SSDDMQKTLD VLKDLQKRSK NFFYSIQVDE ACRVKNIFWS HAVSRLNFEH FGDVITFDTT  420
YKTNKYNMPF APFVGVNNHF QSTFFGCALL REETEESFTW LFNTFKECMN GKVPIGILTD  480
NCPSMAAAIR TVFPNTIHRV CKWHVLKKAK EFMGNIYSKR HTFKKAFHKV LTQTLTEEEF  540
VAAWHKLIRD YNLEKSVYLR HIWDIRRKWA FVYFSHRFFA GMTTTQRSES ANHVFKMFVS  600
PSSSMNGFVK RYDRFFNEKL QKEDSEEFQT SNDKVEIKTR SPIEIHASQV YTRAVFQLFS  660
EELTDSLSYM VKPGEDESTV QVVRMNSQES FLRKEYQVSC DLEREEFSCV CKMFEHKGIL  720
CSHILRVLVQ YGLSRIPERY ILKRWTKDAR DTIPPHLHGY KDDVDASQSR SYRHVMLNRK  780
TVEVAKIANK DVQTFKMAMR VMNKLLEDMK NQLSLDDGDN SREAPKRAAR HKSRSTVLTE  840
DGNEDVGGGD EDSEYDVPSE DEGGNLTADI LPPLKKRSRG RPKVNRYKSG GEVASLKRRK  900
EVGIEKKNTT NECESVEEEN QVIDHEDEVP FPRRFCHTCH EAGHNSRTCG RTSTYKRKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.911210.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976025290.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g19050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g19050
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028200.0AP002820.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0702D12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880431.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ7XRZ80.0Q7XRZ8_ORYSJ; OSJNBb0002N06.8 protein
STRINGOS04T0354200-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-115FAR1-related sequence 5