PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g18584.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 604aa    MW: 62069.5 Da    PI: 7.6266
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g18584.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30316374259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++v+++tYeg+Hnh+
  LOC_Os01g18584.1 316 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQVQRCAEDKTVLITTYEGNHNHQ 374
                       7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-33300376IPR003657WRKY domain
SuperFamilySSF1182902.09E-27308376IPR003657WRKY domain
PROSITE profilePS5081129.31310376IPR003657WRKY domain
SMARTSM007746.8E-36315375IPR003657WRKY domain
PfamPF031065.3E-26317374IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MELRPPPPKH HHHRRRRGGG GEDGGEEEEE ETGRLSLRGG GFWRRHDGEE EEEKGGGRRG  60
EIKEVDFFLG ASGRDVVVAS RRHDDGFRGT THGGGGGGDV NIGLDLLTTT TAGAAAGGAA  120
AGAGEEDTGK NHRKEATTAA VDVELRRVVE ENRRLRGMLD ELNRSYSALY HQYLQVTQQQ  180
NHRHPDHHLI MNNNNNRPSL AQTHRTAATT TATTQQFLEP RASSTAQATA DADMAASDDE  240
AGRGGGDGDA SSPSLSNAAG GGGGGNKMRR VGGQDETAAA APARENGEQQ AAAAAELPCR  300
KPRVSVRARS EAPMISDGCQ WRKYGQKMAK GNPCPRAYYR CTMAIGCPVR KQVQRCAEDK  360
TVLITTYEGN HNHQLPPAAT TMANTTSAAA AMLLSGPAAS RDGAAAALLG HHHHHHPAAM  420
FHQSFPYAST MATLSASAPF PTITLDLTQT PAGGAGAASL LHALHRPPVI HPGAAAQAMP  480
FAVPPQLAMY LPQQRAAAAG LGGAGAARQP SVMETVTAAL AADPNFTTAL AAAISSVVAG  540
GAHHQALSTT PRGSAAGAGD GNGNGSSAAA VATGAASPAA TAEAPAASGS PPRLATQSCT  600
TSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22306376877Probable WRKY transcription factor 4
2lex_A2e-22306376877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.399390.0callus| leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977198420.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g18584.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g18584
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024800.0AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880603.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0E0FKC70.0A0A0E0FKC7_ORYNI; Uncharacterized protein
STRINGONIVA01G14320.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-54WRKY family protein