PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g18440.1 | ||||||||
Common Name | P0469E05.3, P0511C01.23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 307aa MW: 33213 Da PI: 6.6737 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.7 | 3.1e-18 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ri n+ r tf kRr g+lKKA+EL +LCd++++++++++ LOC_Os01g18440.1 10 RIANDATRRATFKKRRRGLLKKASELATLCDVDACLVVYGE 50 899************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.105 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.87E-34 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-24 | 3 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-12 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.6E-18 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-12 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-12 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MARKKIVLDR IANDATRRAT FKKRRRGLLK KASELATLCD VDACLVVYGE GDAEPEVWPS 60 TEVAMNVLRQ FRALPEMEQC KKMMNQEDFL RLRIGKLKEQ LRKMDRDNHE RETLILLHDA 120 LQGRLGTYES LSVEQLTSVD CLASARLKVI TDRLVEIRAP NEDGQVLVPP PPPPPPALPA 180 PPPPPAPMLP LAPPPTHVTP AMPLSSMPPP AFHGMNHHHH QNHFINHGGN DQNAWLMNVA 240 RNGGDLGALV YSAFASSSSS NTGGAGTSAA GAAAPGPDMM DLANPDMPGF GCPWDDDSAG 300 PSFPPM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKIVLDRIANDATRRATFKKRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q5NB09 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00553 | DAP | Transfer from AT5G48670 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g18440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g18440 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002070 | 0.0 | AP002070.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0511C01. | |||
GenBank | AP002480 | 0.0 | AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878343.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0E0MUX0 | 0.0 | A0A0E0MUX0_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q5NB09 | 0.0 | Q5NB09_ORYSJ; Putative MADS-box protein AGL35 | ||||
STRING | ORUFI01G13020.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-26 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g18440.1 |