PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g18420.1 | ||||||||
Common Name | OsJ_01376, P0511C01.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 241aa MW: 26415.3 Da PI: 10.6949 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.9 | 3.4e-15 | 12 | 50 | 4 | 42 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +s r tf kRr g++KKA EL LC++ v+v+++++ LOC_Os01g18420.1 12 AKDSTRRLTFKKRRRGLIKKAGELASLCGIGVCVVVYGE 50 56788999*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.9E-15 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.339 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.94E-27 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 6.2E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-21 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-14 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MARNRIILKK VAKDSTRRLT FKKRRRGLIK KAGELASLCG IGVCVVVYGE GEVKPEVWPS 60 APEARAILSR FNSAPNIDRF KRVTNQEQYL RKRIAKARER TSKADDVNRE RDATIMLYEA 120 ATDKRPVADL NVQELTNLGL VINERINHLK ERIERLGGAA LMAPPPSTQP TEASSSLPPL 180 VPYANGAGME GNKRMKVSTH QKGWFINMST MTGDAGTSAD VEGNTGVGTS ARGDMMHLSN 240 * |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q9LH20 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g18420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g18420 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002070 | 0.0 | AP002070.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0511C01. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878329.1 | 1e-178 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | Q9LH20 | 1e-177 | Q9LH20_ORYSJ; Putative MADS-box protein AGL35 | ||||
STRING | ORUFI01G13010.1 | 1e-176 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65330.1 | 3e-23 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g18420.1 |