PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g15640.1
Common NameLOC4325120, NAC74, NAC8, Os01g0261200, P0469E09.5, P0699D11.24
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 490aa    MW: 54693.9 Da    PI: 5.0112
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g15640.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.5e-5191361128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGf FhP+d el+++yLkkk++g+k+e  e+i+evdiyk+ePwdLp+   v +++++w+fF+ rd+ky++g+r+nrat +gyWk+tgkd++
  LOC_Os01g15640.1   9 LPPGFGFHPKDTELISHYLKKKIHGQKIEY-EIIPEVDIYKHEPWDLPAkcDVPTQDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRA 100
                       79****************************.99***************5356667999*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++  +++++g+kktLvf++gr p+g++t+W+mhey +
  LOC_Os01g15640.1 101 IKM-GKQTIGTKKTLVFHEGRPPTGRRTEWIMHEYYI 136
                       **9.99*****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-593159IPR003441NAC domain
PROSITE profilePS5100555.5349159IPR003441NAC domain
PfamPF023651.0E-2410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MESLRDMVLP PGFGFHPKDT ELISHYLKKK IHGQKIEYEI IPEVDIYKHE PWDLPAKCDV  60
PTQDNKWHFF AARDRKYPNG SRSNRATVAG YWKSTGKDRA IKMGKQTIGT KKTLVFHEGR  120
PPTGRRTEWI MHEYYIDERE CQACPDMKDA YVLCRITKRN DWIPGNGNEL DNSDPHPEPY  180
DAPPSVISTE QLNPAAEPVV GVEAAPVTVA EPDGVTTSAI TANIPSPSDD INLDDWLNEL  240
FDPFFDPEQS LASADLSPDE QNVESSNVGA LAPKVEQDYS SPNENVVDDT EYLLPEDVYN  300
ILHPGTDDFN MLQNPLDQYP IQYATDVWSG IQKEELWSPQ ANAEPSQSNE AADNGIIRRY  360
RSMKTPETSV PQFKGKTQAK MRVGINKMAT SSSESINQTI KFENSGRLVE HQKNQAHDVA  420
STKRSDAGKP STELSSNRGF LRGIRNAFAG CSDARWNMIL VAGFAIGVAV VALHIGQRLG  480
LSQRDQQHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-44616212172Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.43870.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166305040.0
Expression AtlasQ7GCL7-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g15640.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g15640
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281870.0AB028187.1 Oryza sativa mRNA for OsNAC8 protein, complete cds.
GenBankAK1028080.0AK102808.1 Oryza sativa Japonica Group cDNA clone:J033108J08, full insert sequence.
GenBankGU1203470.0GU120347.1 Oryza sativa Japonica Group clone KCS602B05 NAC8 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649784.10.0NAC domain-containing protein 74
SwissprotQ7GCL70.0NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A0D9Y6C20.0A0A0D9Y6C2_9ORYZ; Uncharacterized protein
STRINGOS01T0261200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Representative plantOGRP1283345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.12e-66NAC domain containing protein 86
Publications ? help Back to Top
  1. Kikuchi K, et al.
    Molecular analysis of the NAC gene family in rice.
    Mol. Gen. Genet., 2000. 262(6): p. 1047-51
    [PMID:10660065]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]