PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g15460.3
Common NameOs01g0258700, OSNPB_010258700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 465aa    MW: 48941.3 Da    PI: 8.1874
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g15460.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.8e-114874127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      +++e C +++rtG C +GdrC+++H++
  LOC_Os01g15460.3 48 PGEEDCVYYLRTGACGFGDRCRYNHPR 74
                      5899*********************96 PP
2zf-CCCH37.93e-1299123327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C ++++tGtCk+G +Ck++H++
  LOC_Os01g15460.3  99 QPICEYYMKTGTCKFGTNCKYHHPK 123
                       799********************96 PP
3zf-CCCH38.81.5e-12144168327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C+++++tG+Ck+G +CkF+H++
  LOC_Os01g15460.3 144 EKECSYYMKTGQCKFGTTCKFHHPE 168
                       689********************96 PP
4zf-CCCH38.32.2e-12296322127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C++++rtG Ck+G++Ck++H++
  LOC_Os01g15460.3 296 PGQPDCQYYMRTGDCKFGATCKYHHPR 322
                       5789*********************96 PP
5zf-CCCH322.1e-10345368427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        +C ++a++G+C+yG  Ck+ H++
  LOC_Os01g15460.3 345 QPCAYYAQNGYCRYGVACKYDHPM 368
                       69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.0E-74774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.544775IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-84974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-65075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-55374IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-696123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.78896124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-799125IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-999123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-6101125IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-6141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742141169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6142168IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10144168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4147167IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6295322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497295323IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9297322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5300323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5301324IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6341368IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892341369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6342371IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8345368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5345366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSSCVLVLVL LVVVAGPMWR MGLGGGGGGG GGGGGGDGDA AGRLPERPGE EDCVYYLRTG  60
ACGFGDRCRY NHPRDRGGTE FGGGARNAAA LDYPERAGQP ICEYYMKTGT CKFGTNCKYH  120
HPKQDGAVLP VMLNNSGFPI RLGEKECSYY MKTGQCKFGT TCKFHHPEFG GVPMTPGIYP  180
PLQSPSIASP HPYASLANWQ MGRPPVVPGS YIPGSYTPMM LSSGMIPLQG WSPYPASVNP  240
VVSGGAQQNV QAGPVYGMGH HGSSSTIAYG GPYVPYASST GQSSNNQQEH GFPERPGQPD  300
CQYYMRTGDC KFGATCKYHH PRELSAPKSG YMVNSLCLPL RPGAQPCAYY AQNGYCRYGV  360
ACKYDHPMGT LGYSPSALPL SDMPIAPYPI GFSIATLAPS SPSPDLRPEY ISTKDQSVNQ  420
VTSPVAASEP VGSILPKGVF PADTMMRAQT NTTSGGSSSP GGGR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.99310.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379882960.0
Expression AtlasB7F3Z8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g15460.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g15460
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116330.0AK111633.1 Oryza sativa Japonica Group cDNA clone:J013116H24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651248.10.0zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLB7F3Z80.0B7F3Z8_ORYSJ; Os01g0258700 protein
STRINGOGLUM01G11390.10.0(Oryza glumipatula)
STRINGORUFI01G10900.10.0(Oryza rufipogon)
STRINGOS01T0258700-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-122C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]