PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g15350.1 | ||||||||
Common Name | LOC4326230, Os01g0257400, P0462H08.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 467aa MW: 49089.1 Da PI: 7.9939 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.1 | 1.9e-10 | 52 | 78 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+++H++ LOC_Os01g15350.1 52 PGEADCVYYLRTGACGYGENCRYNHPR 78 57899********************96 PP | |||||||
2 | zf-CCCH | 37.3 | 4.7e-12 | 102 | 128 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++++GtCk+G++Ck+ H++ LOC_Os01g15350.1 102 PGQPVCEYYMKNGTCKFGSNCKYDHPR 128 5789*********************96 PP | |||||||
3 | zf-CCCH | 33.4 | 7.6e-11 | 147 | 172 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ +tG+Ck+G++CkF+H++ LOC_Os01g15350.1 147 GEKDCTYYVKTGHCKFGSTCKFHHPE 172 5789********************96 PP | |||||||
4 | zf-CCCH | 37.3 | 4.6e-12 | 300 | 326 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G+ Ck++H++ LOC_Os01g15350.1 300 PGQPECQYYLKTGSCKFGSACKYHHPQ 326 5789*********************97 PP | |||||||
5 | zf-CCCH | 28.6 | 2.4e-09 | 348 | 372 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +C ++ + G+Ck+G++CkF H++ LOC_Os01g15350.1 348 SQPCAYYTQHGFCKFGPTCKFDHPM 372 679********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.211 | 51 | 79 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 51 | 78 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-7 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 55 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 57 | 78 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.765 | 101 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-7 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 103 | 128 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 104 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-5 | 106 | 129 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.502 | 145 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-8 | 147 | 172 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-6 | 148 | 171 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 151 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-6 | 299 | 326 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 299 | 327 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 301 | 326 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 303 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.1E-4 | 305 | 325 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 345 | 372 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.69 | 345 | 373 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 347 | 375 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-7 | 347 | 372 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-5 | 349 | 370 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 467 aa Download sequence Send to blast |
MEPYAAAEGG GGGGGGGSTD TGLEESMWRM GLGGGGGGGG EAVAAGRLPE RPGEADCVYY 60 LRTGACGYGE NCRYNHPRDR AAAAVLNGGG KTTHSAEYPE RPGQPVCEYY MKNGTCKFGS 120 NCKYDHPREG SVQAVMLNSS GYPLRSGEKD CTYYVKTGHC KFGSTCKFHH PEIGGVSETP 180 NMYPPVQPQP ISSSHPYQHL AGWQMGRPPV LPGSFLSGSY PPMMLPSTVV PMQGWNPYIS 240 PVNQVASAGG HQTVQAGPFY GLSHQGPSAA VTYGSQYAPL SSSTMPSSSS KQEPAFPARP 300 GQPECQYYLK TGSCKFGSAC KYHHPQYLNT PKSNCMLSPL GLPLRPGSQP CAYYTQHGFC 360 KFGPTCKFDH PMGTLSYSPS ASSITDLPIA PYPLNYAVAP VAPPSSSSDL RPEYLLTKEF 420 SANQSASPGT TCGPAGAMLK AYAPHMLIRP QTSGAGGMVT THGGEL* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.9029 | 0.0 | callus| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32983943 | 0.0 | ||||
Expression Atlas | Q5NAV3 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g15350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g15350 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK073920 | 0.0 | AK073920.1 Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622429.1 | 0.0 | zinc finger CCCH domain-containing protein 5 | ||||
Swissprot | Q5NAV3 | 0.0 | C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5 | ||||
TrEMBL | A0A0E0MU56 | 0.0 | A0A0E0MU56_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G10840.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0257400-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2761 | 38 | 89 | Representative plant | OGRP2865 | 11 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-115 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g15350.1 |
Entrez Gene | 4326230 |
Publications ? help Back to Top | |||
---|---|---|---|
|