PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g14870.1
Common NameLOC4327109, Os01g0252200, OsJ_01120
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 168aa    MW: 17888 Da    PI: 8.7289
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g14870.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94e-096990627
                      -SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                      C++f rtGtCk+Gd+C++ H++
  LOC_Os01g14870.1 69 CQHFVRTGTCKFGDSCRYFHPK 90
                      ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004519.2E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576673.42E-14447No hitNo description
PfamPF062201.1E-9537IPR013085Zinc finger, U1-C type
SMARTSM003561.1E-46590IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-76790IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-66888IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-76890IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8316891IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MPLGKYYCDY CEKQFQDTPA ARKRHLDGAQ HHRARALWYD AVRRQELHGG GGGAPPLLHQ  60
PGAAAIGVCQ HFVRTGTCKF GDSCRYFHPK PPPANPGPAP SGPVSGPMAQ QSNIQGSQPN  120
FVGYQAADGS SFSGNILGGH TSWGNLPPSL RPPPEGGYPP FPFVDWG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.52170.0callus| flower| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329814430.0
Expression AtlasQ0JP11-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g14870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g14870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714200.0AK071420.1 Oryza sativa Japonica Group cDNA clone:J023090K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610914.11e-120zinc finger CCCH domain-containing protein 3
SwissprotQ0JP111e-121C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0E0MU051e-118A0A0E0MU05_ORYRU; Uncharacterized protein
TrEMBLB8ABS81e-118B8ABS8_ORYSI; Uncharacterized protein
STRINGOS01T0252200-011e-119(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126172326
Representative plantOGRP85391213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.16e-26C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]