PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g14720.1
Common NameLOC4327221, Os01g0249900, OSNPB_010249900, P0434D08.6
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 313aa    MW: 33403.9 Da    PI: 7.6677
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g14720.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57360.16e-1913972096
            DUF573 20 idfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqkifelskkiW 96
                      +df+a++g+   +++ d+  fy+ +++++sf+++ksqlveK+rrLKkK++ + ++      +    ++f+++h+  i++l++ iW
  LOC_Os01g14720.1 13 LDFTARRGTtfASHQyDTGPFYDEIRRRLSFDFTKSQLVEKLRRLKKKYRLCAARmasspHAAAAGFAFRTPHEGAIYDLARHIW 97
                      79******98877778***********************************99996666556677889***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.1E-181297IPR007592Protein of unknown function DUF573
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MPCGYGVPII STLDFTARRG TTFASHQYDT GPFYDEIRRR LSFDFTKSQL VEKLRRLKKK  60
YRLCAARMAS SPHAAAAGFA FRTPHEGAIY DLARHIWPPA LKRDGTASDD DDINPAAAAA  120
TAAVMTPVAM EDGFGGSAPT PTPTPRGRGG RRVRRRMAQE QEAAALPSAP ALTSTDGAHQ  180
EPLVAAMENT LPQIAQLPPV SETEPMPVIA NGANEEAVRS VLSRLLKEFI TSFAVVGQTG  240
PGMGLNMGFG GAGLNADIAG LGFGIAGLNP GVPGADRWRQ HQILELEVYL KRIELVREQV  300
TAALDELRSS EG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.340890.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329829090.0
Expression AtlasQ5NBE6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g14720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g14720
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728860.0AK072886.1 Oryza sativa Japonica Group cDNA clone:J023149P13, full insert sequence.
GenBankAP0012780.0AP001278.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0434D08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644705.20.0probable transcription factor At3g04930
TrEMBLQ5NBE60.0Q5NBE6_ORYSJ; Os01g0249900 protein
STRINGOS01T0249900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.14e-10DNA-binding storekeeper protein-related transcriptional regulator