PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g13460.1 | ||||||||
Common Name | LOC4327781, Os01g0235700, OSNPB_010235700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 618aa MW: 66982.3 Da PI: 6.6213 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 463 | 509 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq LOC_Os01g13460.1 463 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 509 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.5E-50 | 60 | 245 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.831 | 459 | 508 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.79E-15 | 462 | 513 | No hit | No description |
SuperFamily | SSF47459 | 1.09E-18 | 462 | 525 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-10 | 463 | 509 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-18 | 463 | 522 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-16 | 465 | 514 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MVMKMEADED GANGGTGGTW TDEDRALTAS VLGTDAFAYL TKGGGAISEG LVAASLPVDL 60 QNRLQELVES DRPGAGWNYA IFWQLSRTKS GDLVLGWGDG SCREPHDGEM GPAASAGSDE 120 AKQRMRKRVL QRLHSAFGGV DEEDYAPGID QVTDTEMFFL ASMYFAFPRR AGGPGQVFAA 180 GVPLWIPNTE RNVFPANYCY RGYLANAAGF RTIVLVPFET GVLELGSMQQ VAESSDTLQT 240 IRSVFAGAIG NKAGVQRHEG SGPTDKSPGL AKIFGKDLNL GRPSAGPGTG VSEADERSWE 300 QRTGGGSSLL PNVQRGLQNF TWSQARGLNS HQQKFGNGIL IVSNEATPRN NGGVDSSTAT 360 QFQLQKAPPL QKLPQLQKSH QLVKPQQLVS QQQLQPQAPR QIDFSAGTSS KPGVLTKKPA 420 GIDGDGAEVD GLCKDEGPPP ALEDRRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY 480 ALRAVVPNIS KMDKASLLGD AITYITDLQK KLKEMEVERE RLIESGMIDP RDRTPRPEVD 540 IQVVQDEVLV RVMSPMESHP VRAIFQAFEE AEVHAGESKI TSNNGTAVHS FIIKCPGAEQ 600 QTREKVIAAM SRVMNSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-26 | 457 | 519 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 4e-26 | 457 | 519 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 4e-26 | 457 | 519 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 4e-26 | 457 | 519 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 4e-26 | 457 | 519 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 4e-26 | 457 | 519 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 4e-26 | 457 | 519 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 4e-26 | 457 | 519 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 444 | 452 | RRPRKRGRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.45983 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116633242 | 0.0 | ||||
Expression Atlas | Q0JP90 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g13460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g13460 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064943 | 0.0 | AK064943.1 Oryza sativa Japonica Group cDNA clone:J013000P13, full insert sequence. | |||
GenBank | AK121013 | 0.0 | AK121013.1 Oryza sativa Japonica Group cDNA clone:J023047M20, full insert sequence. | |||
GenBank | AP001539 | 0.0 | AP001539.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0708G02. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621308.1 | 0.0 | transcription factor bHLH13 | ||||
TrEMBL | Q0JP90 | 0.0 | Q0JP90_ORYSJ; Os01g0235700 protein | ||||
STRING | OS01T0235700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5174 | 38 | 60 | Representative plant | OGRP2531 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 2e-71 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g13460.1 |
Entrez Gene | 4327781 |