PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g13300.1 | ||||||||
Common Name | LOC4324291, Os01g0234100, P0702F03.19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 496aa MW: 55530.4 Da PI: 7.1927 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.3 | 2.4e-17 | 152 | 241 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v + +l lp f++++ k +++++lede+g+ + ++ +++++ l++GW++F+ +++k+gD+vvF+l+++++f + LOC_Os01g13300.1 152 FVKHMLHSHVVSGFWLGLPAGFCNKYLPK--HDTDIVLEDENGNNHNTNY--LGGKQG--LSAGWRGFAINHDIKVGDVVVFELVSTTKF--K 236 899********************999433..5679***************..888888..9***********************988888..8 PP EEEE- CS B3 94 vkvfr 98 v+++r LOC_Os01g13300.1 237 VHIIR 241 88877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.3E-21 | 146 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-24 | 147 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.50E-27 | 150 | 241 | No hit | No description |
PROSITE profile | PS50863 | 12.478 | 152 | 243 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-18 | 152 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-16 | 152 | 241 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MAIDQPIKKR GRPPGSKNTK NKMEQKMELV HQRLALLDSS SGSDRDDDIG PRAIIIDCDE 60 DDTDDVMEVV PLKMLMPKEV ENEQRTVPGI PQTCNTQNTS NGRTNTTEVP VKGQNKCASY 120 LPKKSSVQAF CGSAMKRAQE IQTKLPAEHP SFVKHMLHSH VVSGFWLGLP AGFCNKYLPK 180 HDTDIVLEDE NGNNHNTNYL GGKQGLSAGW RGFAINHDIK VGDVVVFELV STTKFKVHII 240 RDKNISPTDR APGLKSFYAC KKRKISKEAT DNATKPKEDP ETTRVSSKVA HDDTQNLVHE 300 AIDGIRFSDS EMSFDDVMSY SNFNIVVDGL VIDCKFPDHQ RRTYYELCCA QKSFLHRHLL 360 RQLSLTLVVG VIMETINIAE GIRACGAGTS SQEDFLIWKK TLQSFDLLGM NVAFLLKRVD 420 DILGLPEQPR DPSECSKYNE LKLERSRAGE KVKALESMML TVKDVLKKID AEMEEMESSV 480 RNHDIALRKI ATAPW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54636 | 0.0 | callus| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32991541 | 0.0 | ||||
Expression Atlas | Q0JP99 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g13300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g13300 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106332 | 0.0 | AK106332.1 Oryza sativa Japonica Group cDNA clone:002-101-F09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623792.1 | 0.0 | B3 domain-containing protein Os01g0234100 isoform X2 | ||||
Swissprot | Q0JP99 | 0.0 | Y1341_ORYSJ; B3 domain-containing protein Os01g0234100 | ||||
TrEMBL | B8AB21 | 0.0 | B8AB21_ORYSI; Uncharacterized protein | ||||
STRING | OS01T0234100-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6080 | 23 | 45 | Representative plant | OGRP7667 | 8 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 7e-35 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g13300.1 |
Entrez Gene | 4324291 |
Publications ? help Back to Top | |||
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