PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g12700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 359aa MW: 40487.3 Da PI: 6.6251 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.2 | 2.2e-14 | 86 | 137 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46 +g+WT +E +l +++k++G ++Wk++ + g ++Rt++++k++w++ LOC_Os01g12700.1 86 KGPWTSWENSILEKYIKKHGERNWKLVQKNTGllsfciTRRTDNEIKNYWNT 137 79************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.273 | 81 | 143 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-14 | 82 | 141 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.42E-10 | 83 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-10 | 85 | 141 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-12 | 86 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-9 | 88 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 359 aa Download sequence Send to blast |
MQRECIVSGP IDGSISATGD GARRGVGGMR GHRSRVRGDG GLRMHRSGSD PDSDKAHWYM 60 SNSDDESFVD KDKDCRRGTV APLLKKGPWT SWENSILEKY IKKHGERNWK LVQKNTGLLS 120 FCITRRTDNE IKNYWNTRIK KCKNNRWLLY PANVCNDALN EDQYGSVDPS VREKLTNNQL 180 EDTTSMYSAP QFSYASISNI LDRRLASKDY DSIEDQRNRI EVAAEYEISL PVLKTTNNDI 240 FPSASIFANH GISNGNLSAL STTDALQMEL PLIQFDPNNQ FIYSRDYATH LTNLALLNDQ 300 AEELLNHIDV LNYVVMKKEL SGGSLSPTIN MPCKATAYSS ELPLCKGYRE QDLDFYTQ* |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 2605624 | 0.0 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g12700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g12700 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | D88621 | 0.0 | D88621.1 Oryza sativa mRNA for OSMYB5, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881555.1 | 1e-165 | transcription factor GAMYB | ||||
TrEMBL | A0A0D9Y5H8 | 0.0 | A0A0D9Y5H8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G09110.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15408 | 10 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G32460.1 | 2e-15 | myb domain protein 101 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g12700.1 |