PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g12440.1
Common NameLOC4326729, Os01g0224100, OSNPB_010224100, P0417G05.30, P0443E05.47
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 381aa    MW: 40507.3 Da    PI: 4.5781
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g12440.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19148198155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g
  LOC_Os01g12440.1 148 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDTAAIQLRG 198
                       689*******.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-11148198IPR001471AP2/ERF domain
CDDcd000186.78E-29148208No hitNo description
SuperFamilySSF541714.25E-21149207IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-28149207IPR001471AP2/ERF domain
PROSITE profilePS5103223.393149206IPR001471AP2/ERF domain
SMARTSM003801.6E-33149212IPR001471AP2/ERF domain
PRINTSPR003675.1E-10150161IPR001471AP2/ERF domain
PRINTSPR003675.1E-10172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001012developmental stageG early unicellular microspore stage
PO:0001013developmental stageH late unicellular microspore stage
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MMMWPLEMEE GFVALKRTEH VEVTSLAVAV EATPSAKGGK GKVVVGGGGA GGGVGPTRVR  60
VFCDDFDATD SSSDEDEEEV TARRRVKRYV QEIRLQRAAA VAVPPVKVKG EEVFPAAVSA  120
KMAEAAKARV VLAAGRKRKA GGVDGAEPRF RGVRRRPWGK YAAEIRDPWR RVRVWLGTFD  180
TAEEAAKVYD TAAIQLRGRD ATTNFNQSGD SASLDVPPEV AERVPQPPGA SKNASPATSY  240
DSGEESHAAA ASPTSVLRSF PPSAVVATAD TANKKQPPPP PLVVRETDES VDVFGCSFSD  300
DGGFAGELPP LYTDFDLLAD FPEPPLDFLS NLPVEPFSLA PFSSNNGSPD LHLDDAPSPA  360
AAQVDDFFQD ITDLFQIPVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19142205771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.319080.0callus| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329917260.0
Expression AtlasQ5NAQ6-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g12440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g12440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010540.0AK101054.1 Oryza sativa Japonica Group cDNA clone:J033015K21, full insert sequence.
GenBankAK1065170.0AK106517.1 Oryza sativa Japonica Group cDNA clone:002-107-B02, full insert sequence.
GenBankAP0018000.0AP001800.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0443E05.
GenBankAP0028350.0AP002835.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0417G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629650.10.0ethylene-responsive transcription factor CRF2
TrEMBLQ5NAQ60.0Q5NAQ6_ORYSJ; Os01g0224100 protein
STRINGOS01T0224100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.27e-29cytokinin response factor 2