PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g11910.1 | ||||||||
Common Name | LOC4324583, Os01g0218100, OSNPB_010218100, P0489G09.6, P0665D10.21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 268aa MW: 27241.8 Da PI: 8.9519 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.6e-13 | 80 | 126 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+++P K++Ka+ L ++v ++k+L LOC_Os01g11910.1 80 KSHSEAERRRRERINAHLATLRTMVPCT-----DKMDKAALLAEVVGHVKKL 126 58*************************7.....6**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.186 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-10 | 80 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-14 | 81 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-13 | 81 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-11 | 83 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 5.3E-6 | 166 | 234 | No hit | No description |
CDD | cd04873 | 4.53E-5 | 167 | 233 | No hit | No description |
SuperFamily | SSF55021 | 4.3E-6 | 167 | 234 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MGSAPFGDAV AGGGLYEYQG YHGGFAGGHG LGQPAGRAPA LDDGETEGMD ASAAAAVAAM 60 EMAKRNCGGG REEKAAMALK SHSEAERRRR ERINAHLATL RTMVPCTDKM DKAALLAEVV 120 GHVKKLKSAA ARVGRRATVP SGADEVAVDE ASATGGGGEG PLLLRATLSC DDRADLFVDV 180 KRALQPLGLE VVGSEVTTLG GRVRLAFLVS CGSRGGAAAA AMASVRHALQ SVLDKASSGF 240 DFAPRAASLL GSKRRKVSTF ESSSSSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 90 | ERRRRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.26488 | 0.0 | callus| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32978610 | 0.0 | ||||
Expression Atlas | Q9FTQ1 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g11910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g11910 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068593 | 0.0 | AK068593.1 Oryza sativa Japonica Group cDNA clone:J013152L23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879685.1 | 0.0 | transcription factor bHLH30 | ||||
TrEMBL | A2WM43 | 0.0 | A2WM43_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q9FTQ1 | 0.0 | Q9FTQ1_ORYSJ; DNA binding protein-like | ||||
STRING | OS01T0218100-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11011 | 29 | 38 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 2e-30 | basic helix-loop-helix 32 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g11910.1 |
Entrez Gene | 4324583 |