PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g11510.1
Common NameLOC107275362, Os01g0213300, OsJ_15707, OSJNBa0038J17.14, OSNPB_010213300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 605aa    MW: 65534.7 Da    PI: 4.3678
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g11510.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.73e-131349339
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                      +++++ r +tf kRrng++K A+ LS+L++a vav+i
  LOC_Os01g11510.1 13 VDDERERDITFFKRRNGLFKCASDLSILTGASVAVVI 49
                      578999*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.6E-8163IPR002100Transcription factor, MADS-box
CDDcd002661.39E-19686No hitNo description
SuperFamilySSF554551.44E-13772IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.541349IPR002100Transcription factor, MADS-box
PfamPF003195.9E-151453IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MPRRARRTGA AYVDDERERD ITFFKRRNGL FKCASDLSIL TGASVAVVIE DQNRSKFHAV  60
GTPTVQAVVD AALSSDVEEA AAEARPVADE QLMERIAPLE RELAWLKGEA AEKDETTKAS  120
KARFKMAQKK EENEEEGDTK KKKLFFSKAD KLSSDEMNEL LAEMLEIKKE LNVRLPPLRR  180
RGGKRPIQGS SVPPPPPPPP PPPQPEQQLQ LPQWPNLSGP HNQLLPVAPP PFVADQPPPP  240
PPPAAGGSLW IPELPPPPVE GSPWAGLLPL RPPRFAGMEP SFLESQQAPP PAQVSTQLAP  300
LPLIREEAPL LQEPFLFADQ APVLAPLPAP LQMPVAETHL PLQAPLLQEP FLFSDHAPTL  360
APLPSPLQMP VAETHLPLQV QAPFMQEPFL FSDQAPVLAP PPTPLQMPVE AHMPLEAPWI  420
QEPFLMPDQA PVHAPPPTPL LMPVGADHFP LEAPLFQESL IMADQKSVHA LPPPPLQMPL  480
EAHLPPAAQE YNQDLAVQQQ PQEYENYDYM FENVGLSQAQ PVAAGAGDAG FAAIGNDDNP  540
FGYQQLVASP LYDGQIYFGS GVDNMGVPPA GDFGGVPEAA LPEVEHASSS GWGNNITGDA  600
GAWF*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ94IZ9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g11510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g11510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031040.0AP003104.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0038J17.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636878.10.0pollen-specific leucine-rich repeat extensin-like protein 2
TrEMBLQ94IZ90.0Q94IZ9_ORYSJ; Os01g0213300 protein
STRINGOS01T0213300-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP155501117
Representative plantOGRP9531413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-08AGAMOUS-like 62