PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g11200.1 | ||||||||
Common Name | P0031E09.10, P0466B10.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 276aa MW: 31795.5 Da PI: 8.3306 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.7 | 7.6e-15 | 113 | 161 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+eEd l ++ + +G ++W+++a++m+ +R++kqc++rw+++l LOC_Os01g11200.1 113 AWTPEEDACLERLARGYGFRHWRRVAEEMQpreRRRSPKQCRDRWRDHL 161 8*********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.194 | 106 | 165 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-12 | 110 | 163 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-17 | 113 | 170 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.64E-17 | 113 | 184 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-11 | 113 | 161 | No hit | No description |
Pfam | PF00249 | 3.5E-14 | 113 | 161 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.574 | 162 | 214 | IPR017877 | Myb-like domain |
SMART | SM00717 | 9.7 | 166 | 216 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-5 | 171 | 215 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MEKEVPKNLL RISVASSTQD TERYHTIFYH VSRDTRKVSY DFNHVSRDTH EVSCDTCRVS 60 DDFYHVSRDT RKVSDDFYHV SRDTCEVSDD TYQVAATPSS AMRIILRIRL SPAWTPEEDA 120 CLERLARGYG FRHWRRVAEE MQPRERRRSP KQCRDRWRDH LARDVYHRPF TADDDAELAH 180 LRLRGGGGDR WKDISRAAHC RTSRAMRRRW RELRKSDAFL RALYWHPDQP VPPLLDDALS 240 CSDVLDSSVA SYRGGCDAVA GGGTIVAPGF ACFAA* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q5QNG3 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g11200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g11200 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002092 | 0.0 | AP002092.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031E09. | |||
GenBank | AP002093 | 0.0 | AP002093.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466B10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636830.1 | 1e-100 | transcription factor MYB3R-5 | ||||
TrEMBL | Q5QNG3 | 0.0 | Q5QNG3_ORYSJ; Myb-like transcription factor-like | ||||
STRING | ORUFI01G07580.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 | Representative plant | OGRP10428 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 2e-16 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g11200.1 |