PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g10580.1 | ||||||||
Common Name | LOC4327073, Os01g0202500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | DBB | ||||||||
Protein Properties | Length: 358aa MW: 37090.2 Da PI: 6.3796 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.9 | 6.5e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e e++ C ++ lC+ C l+ H H + LOC_Os01g10580.1 4 LCSACEAAEARVLCCADDAALCARCDLHVHAAnrlagkHHR 44 7******99*********************55678888554 PP | |||||||
2 | zf-B_box | 30.2 | 9e-10 | 59 | 99 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++C+ +++ ++ +fC +++ llC+ C ++ H H LOC_Os01g10580.1 59 PPTCDICQDAHAYFFCVEDRALLCRACDVAVHTAnalvsaH 99 789***************************99545566666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.9E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.566 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.25E-6 | 3 | 44 | No hit | No description |
SMART | SM00336 | 7.6E-16 | 57 | 104 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.499 | 57 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.7E-8 | 59 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.47E-9 | 62 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MKVLCSACEA AEARVLCCAD DAALCARCDL HVHAANRLAG KHHRLPLLSS SSSSSSPSPP 60 TCDICQDAHA YFFCVEDRAL LCRACDVAVH TANALVSAHR RFLLTGVHVG LDAAADDDDK 120 HPPHPLSSSL PRNTAPPPQP PPKRSPSPIY SDDDVIDWAT GGHDIGITGN LPDWSLVDEQ 180 FNTPALPPVV TKTPPKRASR GPVTAGTAAA VFGNLAGGSP DWPLNEFFGF ADFSSGFGFA 240 ENGTSKADSG KIGSMDGSPN GGRSSSSSSS SSAAAAGGGG GGQDFFGQVP EVHWAVPELP 300 SPPTASGLHW QRDPRYGGGA TDASAVFVPD ISSPENPFRC FAAAAAGDHT MKRRRRC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.15198 | 0.0 | leaf| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116011541 | 0.0 | ||||
Expression Atlas | Q0JPT7 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g10580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g10580 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242176 | 0.0 | AK242176.1 Oryza sativa Japonica Group cDNA, clone: J075159I15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630321.1 | 0.0 | B-box zinc finger protein 22 | ||||
TrEMBL | Q0JPT7 | 0.0 | Q0JPT7_ORYSJ; Os01g0202500 protein | ||||
STRING | OS01T0202500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1794 | 33 | 82 | Representative plant | OGRP1804 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 3e-30 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g10580.1 |
Entrez Gene | 4327073 |