PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g09990.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 438aa    MW: 45737.2 Da    PI: 7.6224
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g09990.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.8e-12253298555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N++f  L+ +lP+       K +K +iL +A eY+ksL+
  LOC_Os01g09990.2 253 HMISERKRREKLNDSFLALKAVLPPG-----SKKDKTSILIRAREYVKSLE 298
                       8899********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.284248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.33E-13250302No hitNo description
SuperFamilySSF474593.93E-16250316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-12251296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9253298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-12254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146865.49E-4289317No hitNo description
Gene3DG3DSA:1.20.5.1703.5E-4297316No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEDCSSWIHG YANANATAGN NGFMCGYAAS PVEFQQQQQL VGSQIEHHLN QISMQMGMDD  60
ESAVYDGASM VDVLLMASSS PHHHAGAGSF QYSSPTSSSA SFRSASVSCS PESSAAATTH  120
FLGPPAPSAA AAGFHYPEVS SQAPLPLPLP PYEPQHGQYT TVLSPPPPAP ELPATTTPAT  180
GGAFRRYARH LRPRRLPKPG GCGQRMFKTA MSVLTKMHVA ATYNRQYYYQ QAAAAAASAS  240
AAEAPPSGNQ LQHMISERKR REKLNDSFLA LKAVLPPGSK KDKTSILIRA REYVKSLESK  300
LSELEEKNRE LEARLASRPA AAAKNDKGET AAAPAPEAGD ETKRKDLVEI EVTTSGGGAG  360
AADAAAAAGG DQETCTLNVD LRGGGGGGGM STTDVVLRTL QCLREQIGDG ASLVAMSTSA  420
GSGGRPPRAN LTLQLKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261ERKRRE
2257262RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.327700.0callus| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977197120.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g09990.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g09990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029640.0AK102964.1 Oryza sativa Japonica Group cDNA clone:J033115I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626911.10.0uncharacterized protein LOC4327325
TrEMBLA0A0E0MSM00.0A0A0E0MSM0_ORYRU; Uncharacterized protein
STRINGORUFI01G06710.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-16bHLH family protein