PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g09990.1
Common NameLOC4327325, Os01g0196300, OSNPB_010196300, P0498B01.36
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 440aa    MW: 45927.4 Da    PI: 7.5916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g09990.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-12255300555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N++f  L+ +lP+       K +K +iL +A eY+ksL+
  LOC_Os01g09990.1 255 HMISERKRREKLNDSFLALKAVLPPG-----SKKDKTSILIRAREYVKSLE 300
                       8899********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.284250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.85E-13252304No hitNo description
SuperFamilySSF474593.93E-16252318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-12253298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9255300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-12256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146864.80E-4291319No hitNo description
Gene3DG3DSA:1.20.5.1703.5E-4299318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEDCSSWIHG YANANATAGN NGFMCGYAAS CSPVEFQQQQ QLVGSQIEHH LNQISMQMGM  60
DDESAVYDGA SMVDVLLMAS SSPHHHAGAG SFQYSSPTSS SASFRSASVS CSPESSAAAT  120
THFLGPPAPS AAAAGFHYPE VSSQAPLPLP LPPYEPQHGQ YTTVLSPPPP APELPATTTP  180
ATGGAFRRYA RHLRPRRLPK PGGCGQRMFK TAMSVLTKMH VAATYNRQYY YQQAAAAAAS  240
ASAAEAPPSG NQLQHMISER KRREKLNDSF LALKAVLPPG SKKDKTSILI RAREYVKSLE  300
SKLSELEEKN RELEARLASR PAAAAKNDKG ETAAAPAPEA GDETKRKDLV EIEVTTSGGG  360
AGAADAAAAA GGDQETCTLN VDLRGGGGGG GMSTTDVVLR TLQCLREQIG DGASLVAMST  420
SAGSGGRPPR ANLTLQLKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258263ERKRRE
2259264RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.327700.0callus| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977197120.0
Expression AtlasQ5SMX4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g09990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g09990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029640.0AK102964.1 Oryza sativa Japonica Group cDNA clone:J033115I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626911.10.0uncharacterized protein LOC4327325
TrEMBLQ5SMX40.0Q5SMX4_ORYSJ; BHLH transcription factor
STRINGOS01T0196300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Representative plantOGRP10417410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-16bHLH family protein