PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g09930.1
Common NameP0498B01.25
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 413aa    MW: 43709 Da    PI: 8.7917
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g09930.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.25.9e-13185230555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N++f  L+ +lP+       K +Ka+iL +A e+IksL+
  LOC_Os01g09930.1 185 HMISERKRREKLNDSFVALKAVLPTG-----SKKDKASILIRAREHIKSLE 230
                       8899*********************6.....499***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.68E-13179234No hitNo description
SuperFamilySSF474596.94E-17179247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.046180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16184248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10185230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00135221249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDSSSWIHGY TNANATGANS GFMCGYAASP VEFPQQQQLI SMQMGMDDES AVYDGASMVG  60
DLLMASSSAH HAGAGSFQYS SSTTSSSASF RSASVSCNPE SSAAAAPELP AATGGAFSRY  120
ARHLRPRRPP KPGACGQRMF KTAMSVLANM HVAATYRRQY YYQQAAAAAA AEAAPAPPSD  180
NQLQHMISER KRREKLNDSF VALKAVLPTG SKKDKASILI RAREHIKSLE SKLSELEEKN  240
RELEARLASR PAAKNDKGET AAAEAGDETK REDLVEIEVT TTSGGSGAAA AAATGGDQET  300
CCTLNVDLRG GGGGGMSTTD VVLRTLQCLR EQIGDGASLV AMSTSAGSGG RPPSANLTLQ  360
LKSPTYGRCS YKYEFTLFLV NRQKPTIKHI RYGSRKISMS LSMDDVTMIS PR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188193ERKRRE
2189194RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.327701e-157callus| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977197121e-157
Expression AtlasQ5SMX2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g09930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g09930
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034170.0AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635156.10.0uncharacterized protein LOC107280684 isoform X1
TrEMBLQ5SMX20.0Q5SMX2_ORYSJ; Basic helix-loop-helix protein-like
STRINGONIVA01G07090.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Representative plantOGRP10417410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-14bHLH family protein