PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g09900.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 349aa    MW: 37695.9 Da    PI: 6.7987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g09900.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12244290455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h + Er+RR+++N++f  L+ +lP+       K +K +iL +A eY+ksL+
  LOC_Os01g09900.1 244 QHTMSERKRREKLNDSFVALKAVLPPG-----SKKDKTSILIRAREYVKSLE 290
                       599**********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.25E-14238294No hitNo description
SuperFamilySSF474591.57E-16238307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.665240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-13243288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-10244290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1708.2E-5289309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDSGGWIVHG YTNGATATGA GNHGFTCGYA ASSCGSWEFE QREQQFISSQ IQHRLNEISM  60
HLSMDDDDDQ SAVYGVAMVD DLLTPSPSTH HAVAAAAGSF PSSSSSSASF RSASVSYSPD  120
TSSSAAAAAA TGFYPELSSQ VAPLLPPPPL VRNEPQPGRY TAGLPPPPPP PVTGGAFRRY  180
ARHLGPRRAP KPGACGQRMF KTAMSALAKM HMETTYRRRQ YYYQQAAAAA EAAPPPPSGN  240
NQLQHTMSER KRREKLNDSF VALKAVLPPG SKKDKTSILI RAREYVKSLE SKLSELEEKN  300
RELEARLSTR PDDTKNDEEE VAAPPEAGGE VKREDPVEIE ALDNFFIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248253ERKRRE
2249254RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.884950.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g09900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g09900
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034170.0AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880866.10.0putative transcription factor bHLH041
TrEMBLA0A0P0UZP90.0A0A0P0UZP9_ORYSJ; Os01g0195801 protein
STRINGOS01T0195801-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Representative plantOGRP10417410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-15bHLH family protein