PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g09850.3
Common NameLOC4327319, Os01g0195000, OsJ_00729, OSNPB_010195000, P0001B06.25, P0498B01.11
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 488aa    MW: 51815.9 Da    PI: 8.6098
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g09850.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-067496123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C++Cgk F r  nL+ H r H
  LOC_Os01g09850.3 74 YVCEICGKGFQRDQNLQLHRRGH 96
                      9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.1E-87396No hitNo description
PROSITE profilePS5015711.8017496IPR007087Zinc finger, C2H2
SMARTSM003550.00697496IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.3E-67496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM0035544116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-4139171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.1E-8146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MMLKDLAEIQ QQQLLAAAEE NMSNLTSASG DQASVSSHPA PPPAKKKRSL PGNPDPEAEV  60
IALSPRTLMA TNRYVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRNPKEV VRKKVYVCPE  120
AGCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVHSDWKAHS KVCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAEESARAV TAAAAVAGQQ QHGGGMLFSQ VADVLDHQAA  240
MAMGGHGLMQ ELCLKREQQQ QQQQFAPSWL TAQQQQQQLE AMAGAGNPAA MYGSARLDQE  300
FIGSSTPESG GAQQAGLSFG FSSTSSAPPH PAASSAHMSA TALLQKAAQM GATLSRPSSH  360
AHMAAAAAAS THNSSSSAAT TNAPPPPPTS NVSSTCVGAG GYGLAFEASH FIAADESSRG  420
ARSDRDTGNG VAGAGNDGLT RDFLGLRAFS HGNIMSMAGF DPCMSTTSAS SAAPYDHHHH  480
SNKPWHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-34147208364Zinc finger protein JACKDAW
5b3h_F7e-34147208364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100113KLKQRNPKEVVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.46480.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154350590.0
Expression AtlasQ5SMY2-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g09850.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g09850
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056630.0AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622491.10.0protein indeterminate-domain 7
TrEMBLQ5SMY20.0Q5SMY2_ORYSJ; Os01g0195000 protein
STRINGOS01T0195000-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-105indeterminate(ID)-domain 7