PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g09760.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 873aa    MW: 97945.1 Da    PI: 8.1813
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g09760.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.2e-094678337
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                       W+++E  ++++a +++G++ Wk++++ +g g+++
  LOC_Os01g09760.1 46 QWSKDELMRFYEAYRRHGKN-WKKVSASVG-GKSA 78
                      6*****************99.*********.9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-84289IPR009057Homeodomain-like
PROSITE profilePS5129310.914299IPR017884SANT domain
PfamPF002492.7E-74679IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-44681IPR009057Homeodomain-like
CDDcd001671.25E-44778No hitNo description
PfamPF065846.0E-30486586IPR033471DIRP domain
SMARTSM011351.1E-32486587IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MGPAKGSRTI TKITIKGYDD RQHDEDPNSS SKVKLKKRKM SDLGPQWSKD ELMRFYEAYR  60
RHGKNWKKVS ASVGGKSADT VEALYSVHRT FLSLPEREGT AMGFVALVTG HHNVSQDESK  120
SHKGSDQTVR ASGKVRKREA TGQKEKEAPH AHRSYHERRT SGLSSFKKRY YGELVKNIPR  180
HPSGKRTPRV PVIFPADMNV AHAGIPETEN AINCTKKASG ATNNELECSS HGSPGISESA  240
KFVQGQTFLE AKGTGSLKKR RIEQSMEQGQ TIKDEHKTAM VAKEGNDLTE YQRLTNLFSP  300
DEMLVLDVLE SLVTVPSKIS EPKINIPSGT LGRDDSALSH RREEGPSVKR SKQGKQVGEC  360
SASKTRNKRR KKLIAEEVPT EGVTSNHLDL PEERQVDATE CALNSDLERG TVDLPESTAN  420
ISTKIPDLPS QLKPEINMSR RSKRKSKSPC GSKYVVCNGA DNLQARRLQH CLSSESLRRW  480
CTYEWFYSAV DYPWFMDNEF VNYLNFANLS HLSRLTRSEW STIRSSLGKP RRFSDHFLAA  540
EKDKLENYRK KVRQYYALLS EDSWDSLPPD LARPFSIGQQ VIVRHPSTRE LCDGKVVMME  600
QDRYNVQFDR PDLGVDEVKD TDCMPVNWLD NLPDDLKKRS FLSNNSHNRV EVEQIPKFTS  660
KENWDHISGE AEPSKTMHIT SDEQVEIAVD IERLSNKSTS GNCGPLQPLQ SVDDNVRSRG  720
LSEHRNGHND ELDSYITSFV QMSLAQAKQM VDEAMKEISE NGKSSLEETG ISNEATDCTG  780
PEPESAANSE LPRNLIFNCI ATLLAIKHFS EGRHPPPNIA GVLERACLML RPSCAENLPI  840
YNEIENFIAV IKNQILALVP SASSNARLPM YM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345352PSVKRSKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.459340.0callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329744900.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g09760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g09760
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0644720.0AK064472.1 Oryza sativa Japonica Group cDNA clone:002-110-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619147.10.0protein ALWAYS EARLY 2 isoform X1
TrEMBLI1NL300.0I1NL30_ORYGL; Uncharacterized protein
STRINGORGLA01G0057000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Representative plantOGRP1282645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.27e-61DNA binding