PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g09550.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 25550.5 Da PI: 8.0751 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 31.6 | 4.7e-10 | 4 | 37 | 97 | 128 |
NAM 97 gelvglkktLvfy..kgrapkgektdWvmheyrl 128 g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l LOC_Os01g09550.4 4 GRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 37 6889*********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.616 | 1 | 56 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.84E-13 | 3 | 56 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVSGRQKGCK KILVLYTNFG KHRKPEKTNW VMHQYHLGDL EEEKEGELVV CKIFYQTQPR 60 QCSWSSDRGG GAAATASAVT TAAVQQDQQR RRDSGSGSCS STRDHEVSAT SYSTAGYAVA 120 AAVEMQHLKH AADHFSFAPF RKSFEEVGIS GDQVHSNQLG RSEQQHAGQE QQPHRPLLAT 180 TTAVPATAFL ISRPTNPVSN IVPPAMQHAS VVLDHDQFHV PAILLHHDKF QV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27469 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37990962 | 0.0 | ||||
Expression Atlas | B7F736 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g09550.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g09550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121339 | 0.0 | AK121339.1 Oryza sativa Japonica Group cDNA clone:J023120G13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615071.1 | 1e-170 | NAC domain-containing protein 75 isoform X6 | ||||
Refseq | XP_015615072.1 | 1e-170 | NAC domain-containing protein 75 isoform X7 | ||||
Refseq | XP_025879363.1 | 1e-170 | NAC domain-containing protein 75 isoform X7 | ||||
Refseq | XP_025879364.1 | 1e-170 | NAC domain-containing protein 75 isoform X7 | ||||
Refseq | XP_025879365.1 | 1e-170 | NAC domain-containing protein 75 isoform X7 | ||||
TrEMBL | B7F736 | 1e-173 | B7F736_ORYSJ; cDNA clone:J023120G13, full insert sequence | ||||
STRING | ORUFI01G06380.1 | 1e-170 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 5e-28 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g09550.4 |