PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g09280.1 | ||||||||
Common Name | LOC4326766, Os01g0187900, OSNPB_010187900, P0512G09.15, P0695A04.24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 367aa MW: 39043 Da PI: 9.5223 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.1 | 4.3e-13 | 109 | 153 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + Rt+ q+ s+ qky LOC_Os01g09280.1 109 PWTEEEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 153 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.60.10 | 0.001 | 2 | 23 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.565 | 3 | 19 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 19.1 | 102 | 158 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-16 | 104 | 158 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.0E-19 | 105 | 157 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.8E-12 | 106 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-11 | 106 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.83E-9 | 109 | 154 | No hit | No description |
Pfam | PF00249 | 1.1E-10 | 109 | 153 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MTRRCSHCSN NGHNARTCPA RGGGGGGGGV RLFGVRLTSP PEVAMKKSAS MSCIASSLGS 60 GGGSGGSSPA GTGRGGGGGG EGAAGYASDD PTHASCSTNG RGERKKGTPW TEEEHRMFLM 120 GLQKLGKGDW RGISRNFVVS RTPTQVASHA QKYFIRQTNS SRRKRRSSLF DMVPEMPMDE 180 SPVVVEQLML HSTQDEATSS NQLPISHLVK QKEPEFARHL SDLQLRKHEE SEFTEPSLAA 240 LDLEMNHAAP FKTKFVLTMP TFYPALIPVP LTLWPPNVAN VGESGTNHEI LKPTPVNGKE 300 VINKADEVVG MSKLTIGDGS SNSIEPSALS LQLTGPTNTR QSAFHVNPPM AGPDLNKRNN 360 SPIHAV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.3818 | 0.0 | callus| flower| leaf| panicle| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32981634 | 0.0 | ||||
Expression Atlas | Q5SND9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g09280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g09280 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071611 | 0.0 | AK071611.1 Oryza sativa Japonica Group cDNA clone:J023105I20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621787.1 | 0.0 | transcription factor MYBS3-like | ||||
TrEMBL | A0A0E0FHD2 | 0.0 | A0A0E0FHD2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2WLJ1 | 0.0 | A2WLJ1_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q5SND9 | 0.0 | Q5SND9_ORYSJ; Os01g0187900 protein | ||||
STRING | OS01T0187900-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA01G06510.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1939 | 37 | 91 | Representative plant | OGRP394 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 2e-75 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g09280.1 |
Entrez Gene | 4326766 |