PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g09100.1 | ||||||||
Common Name | LOC4325658, Os01g0186000, OsJ_00671 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 220aa MW: 22640.1 Da PI: 7.5561 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.2 | 9.2e-30 | 106 | 164 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K vk+s++pr+YYrC+ agC vkk+ver+ +dp++v++tY g Hnh LOC_Os01g09100.1 106 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAAGCGVKKRVERDGDDPRYVVTTYDGVHNHA 164 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.3E-31 | 93 | 166 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-27 | 98 | 166 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.089 | 101 | 166 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-33 | 106 | 165 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-23 | 107 | 163 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MAASLGLCHE TSYAYSYPAS NTSSSLCFPP LMADHIVDGG GGGGCSFGEF LELGHSVYSL 60 PLPPPPSQPV VVAGGNNDQY GVSSSSSAAA TTSRIGFRTR SEVEVLDDGF KWRKYGKKAV 120 KSSPNPRNYY RCSAAGCGVK KRVERDGDDP RYVVTTYDGV HNHATPGCVG GGGHLPYPTS 180 AAPPWSVPAA AASPPPAHAQ AWGAPLHAAA AAHSSESSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-26 | 96 | 166 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-26 | 96 | 166 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.29979 | 0.0 | leaf| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 33519195 | 0.0 | ||||
Expression Atlas | Q7XAA3 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g09100.1 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g09100 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002486 | 0.0 | AP002486.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F03. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY341854 | 0.0 | AY341854.1 Oryza sativa (japonica cultivar-group) WRKY13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633261.1 | 1e-159 | probable WRKY transcription factor 50 | ||||
TrEMBL | Q7XAA3 | 1e-157 | Q7XAA3_ORYSJ; Os01g0186000 protein | ||||
STRING | ORGLA01G0052400.1 | 1e-156 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 8e-38 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g09100.1 |
Entrez Gene | 4325658 |