PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g09080.1 | ||||||||
Common Name | LOC4325657, Os01g0185900, OSNPB_010185900, P0510F03.24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 508aa MW: 52125.2 Da PI: 6.8304 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.8 | 1.3e-29 | 237 | 296 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+H h+ LOC_Os01g09080.1 237 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApNCPVRKQVQRCADDMSILITTYEGTHSHP 296 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-31 | 222 | 298 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-27 | 230 | 298 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.772 | 232 | 298 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-36 | 237 | 297 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-26 | 238 | 296 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MDVVVESPPV RDEKKVDVAA IGGAPPIVFE SFAPSTQRDS TIIKKEEKME AAKAEMGEVR 60 EENERLKTML TRIVSDYKSL HTHFLDVVKV KEQTAAELSG DDDDDEPDDL VSLSLCTRPN 120 AAATRRKGHE RTPSSGGGGD DGRLSLGLSC ARGGVASDDD DDKQASRRAL PPMPVLNLSS 180 DSSGDAAGAG AGEPTQPNKA SRSSSGGGDG ADDEVLQQQQ AKKARVSVRV KCDTPTMNDG 240 CQWRKYGQKI SKGNPCPRAY YRCTVAPNCP VRKQVQRCAD DMSILITTYE GTHSHPLPPA 300 AAAMASTTSA AAAMLTSGST NSTMHGSGGV HHHLPFASAV GGGGGVGLLG PTTISTATSC 360 PTVTLDLTAP HSLLHPSSAS PYAAAAAGYE SSRALPAAWS SGYLAYGGAA AAQPYYAKGV 420 APSPFGHHFG MMGMAAAAAR PAPEQLFGGQ TTSPYLQRAI GGGGVAPAAV TDTIAKAITS 480 DPSFQSVLAA AITSYMGRGG GAAAPNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 224 | 300 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 230 | KKARVSVRVK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.88360 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156765855 | 0.0 | ||||
Expression Atlas | Q5VRX5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g09080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g09080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK289240 | 0.0 | AK289240.1 Oryza sativa Japonica Group cDNA, clone: J100075H09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625260.1 | 0.0 | probable WRKY transcription factor 72 | ||||
TrEMBL | Q5VRX5 | 0.0 | Q5VRX5_ORYSJ; Os01g0185900 protein | ||||
STRING | OS01T0185900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12081 | 29 | 38 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 2e-43 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g09080.1 |
Entrez Gene | 4325657 |