PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g08180.1
Common NameP0013F10.20
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family BES1
Protein Properties Length: 162aa    MW: 17375.3 Da    PI: 10.643
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g08180.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822145.64.4e-45381502112
            DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspess 93 
                       +s r+pt++ErEnn++RERrRR++a++iyaGLRa ++y+lpk+aD+n+Vl+ALc+eAG++v+dDG++ r+++++l  + + +g s+++ + ss
  LOC_Os01g08180.1  38 TSLRHPTARERENNRQRERRRRQVATRIYAGLRAGAGYALPKHADQNDVLRALCAEAGYLVDDDGNVSRRHDERLaGAGAGGGGSSDQLQVSS 130
                       789************************************************************************999999************ PP

            DUF822  94 lq.sslkssalaspvesysa 112
                       ++  +  + a++ + ++++ 
  LOC_Os01g08180.1 131 YSgATEAAVAIQHQEQEQEI 150
                       **777777777777666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056878.4E-3140141IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MAPGTKAVAA AAGRRGCIRS TRGPWTVRRR GRGGGVTTSL RHPTAREREN NRQRERRRRQ  60
VATRIYAGLR AGAGYALPKH ADQNDVLRAL CAEAGYLVDD DGNVSRRHDE RLAGAGAGGG  120
GSSDQLQVSS YSGATEAAVA IQHQEQEQEI SLELTLSFTY M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A7e-1341118372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B7e-1341118372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C7e-1341118372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D7e-1341118372449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5VRV9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g08180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g08180
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0025230.0AP002523.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0013F10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879038.11e-113BES1/BZR1 homolog protein 4-like
TrEMBLA0A0D3EK921e-111A0A0D3EK92_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FH241e-111A0A0E0FH24_ORYNI; Uncharacterized protein
TrEMBLA0A0E0MS391e-111A0A0E0MS39_ORYRU; Uncharacterized protein
TrEMBLQ5VRV91e-111Q5VRV9_ORYSJ; Uncharacterized protein P0013F10.20
STRINGORUFI01G05260.11e-112(Oryza rufipogon)
STRINGONIVA01G05630.11e-112(Oryza nivara)
STRINGOBART01G05000.11e-112(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132013032
Representative plantOGRP100841011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.11e-08BES1/BZR1 homolog 2