PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g07880.1
Common NameOSJNBa0089K24.18
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 204aa    MW: 21092 Da    PI: 10.607
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g07880.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.82e-12109169262
                       XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                       ke  r +r+ +NR++A+  R+RKka++ eLe k+k Le  N +L +++++l++e  +l++ 
  LOC_Os01g07880.1 109 KEQNRLKRLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAELEQRVSTLQNENNTLRQI 169
                       78899***************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-13108172IPR004827Basic-leucine zipper domain
PfamPF001707.5E-11109170IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.185110173IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.19E-12113170No hitNo description
CDDcd147047.03E-15113163No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-16113172No hitNo description
PROSITE patternPS000360115130IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAAQEQEQEK QQVKTSTTSS LPSSSERSSS SAPNNLKEGG GVESDEEIRR VPEMGGGGGS  60
ASSGAGADER QGKEDGKQQG GGGGGAAAAG GGQEQAPPAR KRGRSAGDKE QNRLKRLLRN  120
RVSAQQARER KKAYMTELEA KAKDLELRNA ELEQRVSTLQ NENNTLRQIL KNTTAHAGKR  180
GGGGGGKGGD GGGGGKKHHF TKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184192GGKGGDGGG
2186195KGGDGGGGGK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5VR11
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g07880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g07880
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032150.0AP003215.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0089K24.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617496.11e-139transcription factor HY5
SwissprotQ9SM505e-46HY5_SOLLC; Transcription factor HY5
TrEMBLA0A0E0MS141e-138A0A0E0MS14_ORYRU; Uncharacterized protein
TrEMBLQ0JQA41e-138Q0JQA4_ORYSJ; Os01g0174000 protein
TrEMBLQ5VR111e-137Q5VR11_ORYSJ; Putative TGACG-motif binding factor
STRINGORUFI01G05050.11e-138(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Representative plantOGRP20811737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-33bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]