PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g07450.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 261aa    MW: 27583.7 Da    PI: 8.7621
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g07450.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.64e-152269148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEde+l+  ++++G  +W++++   g+ R++k+c++rw +yl
  LOC_Os01g07450.1 22 KGLWSPEEDERLATHIARFGVSCWSSVPDLAGLQRCGKSCRLRWMNYL 69
                      678*******************************************97 PP
2Myb_DNA-binding46.68e-1575117145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       rgr++  E+el++ ++ +lG+  W+ Ia++++ gR+++++k++w+
  LOC_Os01g07450.1  75 RGRFSHHEEELILALHDKLGNS-WSQIAARLP-GRSDNEIKNFWN 117
                       89******************99.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-221672IPR009057Homeodomain-like
PROSITE profilePS5129415.9721769IPR017930Myb domain
SuperFamilySSF466893.36E-2720116IPR009057Homeodomain-like
SMARTSM007179.3E-112171IPR001005SANT/Myb domain
PfamPF002496.7E-142269IPR001005SANT/Myb domain
CDDcd001673.63E-92569No hitNo description
PROSITE profilePS5129423.92470124IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-2573124IPR009057Homeodomain-like
SMARTSM007177.9E-1474122IPR001005SANT/Myb domain
PfamPF002498.5E-1375117IPR001005SANT/Myb domain
CDDcd001672.90E-977117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRAVEQQQG GCCSEKKKKL RKGLWSPEED ERLATHIARF GVSCWSSVPD LAGLQRCGKS  60
CRLRWMNYLR PDLKRGRFSH HEEELILALH DKLGNSWSQI AARLPGRSDN EIKNFWNARL  120
RKKLRQTESS SSATTAAGAA ATGHRRGEAD RSRPPPPASF NTFSHDDRTT PAPAAHIAAA  180
AAVEAPAAMT TTGGAVGGGV LVDNSGGHRD AVAEAARGHV GSGDDDGFLA VLLGEYYLDA  240
GGHGDGFSFL GGGGGGHVFS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-262012425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124RLRKKLR
2119125LRKKLRQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed specifically in guard cells (PubMed:16005292). Expressed in sink tissues, such as xylem, roots and developing seeds (PubMed:22708996). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:22708996}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g07450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g07450
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029120.0AP002912.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028E10.
GenBankAP0033390.0AP003339.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1276_B06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643964.10.0transcription factor MYB61
SwissprotQ8VZQ29e-57MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A0E0MRW70.0A0A0E0MRW7_ORYRU; Uncharacterized protein
STRINGORUFI01G04660.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144481725
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-57myb domain protein 86
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]