PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g06852.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 650aa MW: 73782.2 Da PI: 6.3526 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81 | 2e-25 | 95 | 188 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr.....traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA+++GFs+r+s+ ++ k+++ i++rtf+Cs+ g+r ++k++ ++ ++ +r+etr+ C+a++k+++++dg ++++++ +eHnH LOC_Os01g06852.1 95 DFYNAYARDMGFSIRRSSYHYVKDSTIIKNRTFCCSRAGTRGHDKRE-DQISNygqcfSRPETRCMCRACMKISLRDDGLYCIYEFLHEHNHI 186 6******************************************9999.3433345556**********************************9 PP FAR1 89 la 90 la LOC_Os01g06852.1 187 LA 188 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-18 | 95 | 188 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.9E-30 | 310 | 404 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
MASLSNLPRS IKVTDSLHEQ VTTMPTEPAA SAGTFVLHHP GTSFHGNLEG ELETIKNGYI 60 NQDPSKIEAT PQADPSKGKA PIIGMKFNSE QEAYDFYNAY ARDMGFSIRR SSYHYVKDST 120 IIKNRTFCCS RAGTRGHDKR EDQISNYGQC FSRPETRCMC RACMKISLRD DGLYCIYEFL 180 HEHNHILATG SQALYLRSQR KITEAQMASA ENAKSVGISN KATIDLMAKE AGGYENLGFT 240 REDMKNRLYS KRSLKVNEGD TGGVLEYMEK KSSEDVNFFY SILVDEDDLI TNIFWTDSKM 300 IADYEVFGDV LCFDTTYRKL NDGRPFGLLV GVDNHKKSVV FGAALLYDET ADSFVWLFKT 360 FLKAMSGKKP QTILTDEDAA MAKAIKLVMP ESHHRICVWH MNQNACKHLA GVVKEYKKFN 420 EDFQNCIYDK EEEDEFINAW NRMLEKLLSD KRYEEEQVLQ TLNCDLYYCG DIDAEMVYKL 480 KVHESDETYL MAANNAQKLA EDVEKYLSIR HDPDLDKSGT EENVGPSKAR GIKVKEKAIR 540 GSRRPIGGFD KATQRSKKKK SDSNTSKCPV QAEVVTPSLP YTMMQIQGRS EIPTNYNHMQ 600 MPDYYHVEGA SLLQSSGYFR TSEQSQGMQH EETAQTIDTY PYSMFAHLN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 246 | 255 | RLYSKRSLKV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g06852.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g06852 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003209 | 0.0 | AP003209.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1189A09. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683537.1 | 1e-175 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0P0V514 | 0.0 | A0A0P0V514_ORYSJ; Os01g0607050 protein | ||||
STRING | Sb02g030865.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-70 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g06852.1 |