PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g06640.2 | ||||||||
Common Name | LOC4324065, Os01g0159800, OsJ_00465 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 28327.5 Da PI: 9.9178 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.7e-11 | 69 | 113 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN + +Lr+++P k ++Ka+ L ++v+ +k+L LOC_Os01g06640.2 69 HSEAERRRRERINAHLTTLRRMIPDT-----KQMDKATLLARVVDQVKDL 113 9************************9.....67***********999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-13 | 55 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.761 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-13 | 68 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-8 | 69 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-11 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.2E-5 | 161 | 223 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAECQPLQLQ EGKKLQELQP YDGCNPSVYR GPILLPRQAN SAPPAVPPEM SSSSGSGRSA 60 TEARALKIHS EAERRRRERI NAHLTTLRRM IPDTKQMDKA TLLARVVDQV KDLKRKASEI 120 TQRTPLPPET NEVSIECFTG DAATAATTVA GNHKTLYIKA SISCDDRPDL IAGITHAFHG 180 LRLRTVRAEM TSLGGRVQHV FILCREEGIA GGVSLKSLKE AVRQALAKVA SPELVYGSSH 240 FQSKRQRILE SHCSIMSI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 77 | ERRRRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.1443 | 0.0 | callus| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32991501 | 0.0 | ||||
Expression Atlas | Q7F7Z2 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g06640.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g06640 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT831568 | 0.0 | CT831568.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN107N12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623162.1 | 0.0 | putative transcription factor bHLH107 | ||||
TrEMBL | A0A0E0MRM8 | 0.0 | A0A0E0MRM8_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8ADE1 | 0.0 | B8ADE1_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q7F7Z2 | 0.0 | Q7F7Z2_ORYSJ; ESTs C26093(C11622) | ||||
STRING | ORUFI01G04050.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 2e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g06640.2 |
Entrez Gene | 4324065 |
Publications ? help Back to Top | |||
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