PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g06550.1
Common NameLOC4324058, Os01g0158900, OSNPB_010158900, P0041E11.9
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-X1
Protein Properties Length: 910aa    MW: 99555.6 Da    PI: 8.4579
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g06550.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.21.3e-06262279118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG+H+C   CH GpCppC
  LOC_Os01g06550.1 262 CGIHRCPVDCHDGPCPPC 279
                       ****************** PP
2zf-NF-X116.51.8e-05369388119
          zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                       CG+HkC + CH+G C + C+
  LOC_Os01g06550.1 369 CGRHKCPERCHRGSCVEtCR 388
                       ***************99997 PP
3zf-NF-X116.51.9e-05422441120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG+H C + C+eG+C pCp+
  LOC_Os01g06550.1 422 CGRHACRRRCCEGDCAPCPE 441
                       ******************96 PP
4zf-NF-X122.32.9e-07449468120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG+HkC ++CH+G C pCp+
  LOC_Os01g06550.1 449 CGNHKCLSPCHRGACAPCPL 468
                       ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578504.24E-6108166No hitNo description
PROSITE patternPS013590109159IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.096109160IPR001841Zinc finger, RING-type
SMARTSM004380.02209227IPR000967Zinc finger, NF-X1-type
PfamPF014220.038210226IPR000967Zinc finger, NF-X1-type
CDDcd060088.41E-9252300No hitNo description
PfamPF014225.8E-5262279IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0011262281IPR000967Zinc finger, NF-X1-type
CDDcd060083.18E-7305345No hitNo description
PfamPF014220.41315333IPR000967Zinc finger, NF-X1-type
SMARTSM004380.082315334IPR000967Zinc finger, NF-X1-type
CDDcd060085.96E-9359408No hitNo description
PfamPF014220.0033369388IPR000967Zinc finger, NF-X1-type
SMARTSM004380.035369389IPR000967Zinc finger, NF-X1-type
CDDcd060084.27E-9412460No hitNo description
PfamPF014220.0041422440IPR000967Zinc finger, NF-X1-type
SMARTSM004380.087422441IPR000967Zinc finger, NF-X1-type
CDDcd060081.64E-10439487No hitNo description
PfamPF014224.8E-5449467IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0038449468IPR000967Zinc finger, NF-X1-type
SMARTSM0043825512527IPR000967Zinc finger, NF-X1-type
PfamPF0142236516526IPR000967Zinc finger, NF-X1-type
PfamPF0142289535544IPR000967Zinc finger, NF-X1-type
SMARTSM00438160535580IPR000967Zinc finger, NF-X1-type
PfamPF014220.36617627IPR000967Zinc finger, NF-X1-type
SMARTSM00438200617661IPR000967Zinc finger, NF-X1-type
PfamPF0142212671688IPR000967Zinc finger, NF-X1-type
SMARTSM004380.1671689IPR000967Zinc finger, NF-X1-type
SMARTSM004380.44734755IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MPFSYAAAAS GSASSSRKPV PVAAAAARRP APSPAAAAAP APSPSNPSAV SDSDPSSYSS  60
SGEETDLTAS DPAAASVISS YLSVAGDGAD LSKVGIFLSS AARRRSPPCL ICFDPIRPSD  120
PVWSCSASCF ALLHLHCIQS WAHQSSSAAP SPTWGCPKCR FPYPKSQTPT SYLCFCSKTV  180
DPAPDPWILP HSCGDVCGRR LNADRDSGCE HNCLLLCHPG PCPPCPAIVP NAMCFCGSHR  240
ETRRCSHQRY SCSGKCNKRL GCGIHRCPVD CHDGPCPPCA VRGKHKCECG ETMEERLCSE  300
RVFQCKRECG GMLQCGKHSC ERGCHAGKCG GCPLQGRRTC PCGKKDYPSL DCDAEAATCG  360
STCEKVLGCG RHKCPERCHR GSCVETCRLV ITKSCRCGGL KKEVPCYQEL TCERKCQRLR  420
NCGRHACRRR CCEGDCAPCP EVCDKRLRCG NHKCLSPCHR GACAPCPLMK TISCNCGQTF  480
FEVPCGTEKN QKPPKCSKKC NIARLCRHKL ECRPHKCHYG ACPPCKLICG EELSCGHRCK  540
LRCHGPIAPP NPEFTLKPIK RKKGKHIDST PGTPCPPCQE VVLVPCFGHH LGQERAILCS  600
KRRQFPCQNL CGNPLNCGNH YCTKACHVLQ IPLSQPEGDQ SAILSLASAS AFAEPCEECN  660
LPCQRVREPP CSHPCPLPCH LNDCPPCKAL VKRPCHCGAM VHAFECMYYN NLNATKQQKV  720
RSCGGPCHRK LPNCPHLCSE ICHPGQCPSV DQCMKKVNVR CACNNLKKEW ICQDVLKEYR  780
QSGRDPKQIP KNQYAVGLLA CGEDCVKKVK AADSELHLRK IQEIKTPAVE VENVPKRRKR  840
RNRGQESVES SKFQEIKAVA LKFLLVIFLC IIVVAGLYLL WKGVYRLSDW MNDMEEQRAR  900
QRHLKPGRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1834840PKRRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.124540.0callus| flower| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329767830.0
Expression AtlasQ5ZEL8-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g06550.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g06550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667650.0AK066765.1 Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621682.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0E0MRL80.0A0A0E0MRL8_ORYRU; Uncharacterized protein
TrEMBLQ5ZEL80.0Q5ZEL8_ORYSJ; Os01g0158900 protein
STRINGORUFI01G03990.10.0(Oryza rufipogon)
STRINGOS01T0158900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Representative plantOGRP63251718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors