PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g04750.1
Common NameOs01g0140700, P0480E02.22
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family RAV
Protein Properties Length: 318aa    MW: 35296.5 Da    PI: 7.6994
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g04750.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.14.3e-1365113155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  LOC_Os01g04750.1  65 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRFRG 113
                       78****9888.8*********......44*************************98 PP
2B391.27.9e-29178271185
                       EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f+k+ tpsdv+k++rlv+pk+ ae+h         +    +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL+ gD+v F++
  LOC_Os01g04750.1 178 FEKAVTPSDVGKLNRLVVPKQQAERHfpfplrrhsSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSR 270
                       89*****************************999855667999************************************************96 PP

                       - CS
                B3  85 d 85 
                       +
  LOC_Os01g04750.1 271 S 271
                       5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.69E-1365119No hitNo description
PfamPF008472.7E-865113IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-1665119IPR016177DNA-binding domain
PROSITE profilePS5103221.07466121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-1966119IPR001471AP2/ERF domain
SMARTSM003809.2E-2466127IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-37174291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-29175287IPR015300DNA-binding pseudobarrel domain
CDDcd100173.29E-28176271No hitNo description
PROSITE profilePS5086313.394178287IPR003340B3 DNA binding domain
PfamPF023627.7E-26178272IPR003340B3 DNA binding domain
SMARTSM010197.1E-20178288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEQEAAMVVF SCNSGSGGSS STTDSKQEEE EEEELAAMEE DELIHVVQAA ELRLPSSTTA  60
TRPSSRYKGV VPQPNGRWGA QIYERHARVW LGTFPDEEAA ARAYDVAALR FRGRDAVTNR  120
APAAEGASAG ELAFLAAHSK AEVVDMLRKH TYDDELQQGL RRGSRAQPTP RWAREPLFEK  180
AVTPSDVGKL NRLVVPKQQA ERHFPFPLRR HSSDAAGKGV LLNFEDGDGK VWRFRYSYWN  240
SSQSYVLTKG WSRFVREKGL RPGDTVAFSR SAAAWGTEKH LLIDCKKMER NNLATVDDDA  300
RVVVKLFGVD IAGDKTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4817529311122DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.272990.0callus| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172271810.0
Expression AtlasQ9AWS7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g04750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g04750
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029130.0AP002913.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0480E02.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878463.10.0putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS70.0Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A0E0BWW50.0A0A0E0BWW5_9ORYZ; Uncharacterized protein
STRINGOS01T0140700-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-96related to ABI3/VP1 2