PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g04020.1 | ||||||||
Common Name | LOC4325981, Os01g0131600, OsJ_00247, P0504H10.27 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 36528.6 Da PI: 4.5185 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.6 | 3e-13 | 114 | 157 | 1 | 49 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaa 49 ++y+GVr +k +g+W+AeIr + + r +lg+f+ta+ A +a+ + LOC_Os01g04020.1 114 TCYRGVRLRK-WGKWAAEIRNpF-----TgHREWLGTFDTADAASAAY-QS 157 68******99.**********55.....45999*******55555555.43 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.3E-8 | 114 | 156 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-14 | 115 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-14 | 115 | 164 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.148 | 115 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-8 | 116 | 127 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.99E-14 | 116 | 147 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-18 | 116 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-8 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MAPSKQQQML LKKVMAKKPK TKRLSGFGLK PSAAFSRPHV PSAAASLQPS RRVRVVFEDP 60 DATDSDSDDD EDAGAASKKR YFELFIGKPA SSTKQASPAS TVAAYANIGK VGSTCYRGVR 120 LRKWGKWAAE IRNPFTGHRE WLGTFDTADA ASAAYQSASR NFAEEKRRRG VASSASPASS 180 ATPTPTASSS SSTSAAPFAH PSPSSVLEAT KPAPKPESPP LPEQAATPLL VEATNETAEL 240 PDDPEFYKDI LRGLQLPDID PMDFRAGLDA LDISDVPAYM NGEQDVLFTE DMLLGDFAEE 300 DDLDLDDIGD DFCEDFPEIP SGYDFGRGDM FRQVDFCV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.4663 | 0.0 | callus| flower| leaf| panicle| root| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32986342 | 0.0 | ||||
Expression Atlas | Q9LGB6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g04020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g04020 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119645 | 0.0 | AK119645.1 Oryza sativa Japonica Group cDNA clone:002-130-G05, full insert sequence. | |||
GenBank | AP002526 | 0.0 | AP002526.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504H10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY341828 | 0.0 | AY341828.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP210 mRNA, complete cds. | |||
GenBank | EU837259 | 0.0 | EU837259.1 Oryza sativa Japonica Group clone KCS234C10 AP2 domain containing protein mRNA, complete cds. | |||
GenBank | KC988330 | 0.0 | KC988330.1 Oryza sativa AP2 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616539.1 | 0.0 | ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | A0A0D3EJ88 | 0.0 | A0A0D3EJ88_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0MQZ0 | 0.0 | A0A0E0MQZ0_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1NJY5 | 0.0 | I1NJY5_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q9LGB6 | 0.0 | Q9LGB6_ORYSJ; AP2 domain containing protein | ||||
TrEMBL | R9TI30 | 0.0 | R9TI30_ORYSA; AP2 transcription factor | ||||
STRING | ORUFI01G02130.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ORGLA01G0017500.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART01G02050.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12930 | 25 | 28 | Representative plant | OGRP12816 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 8e-12 | related to AP2 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g04020.1 |
Entrez Gene | 4325981 |