PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g03890.1
Common NameLOC4325972, Os01g0129600, OsJ_00237, P0408F06.25
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 308aa    MW: 32379.6 Da    PI: 7.357
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g03890.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260994.6e-314106198
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+
  LOC_Os01g03890.1   4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQANATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLC 96 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelallk 98 
                       q+++e +l++
  LOC_Os01g03890.1  97 QSAVESVLRG 106
                       ***9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381554.0E-1211304IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.5773109IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-244102IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQANATVF LAKFYGRAGL INLITAGPEH  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQSAV ESVLRGMPIA QPPPSATAVP  120
PLPTCDIRHV GARRGDVHGA AAGPVADLHR LDISSRAKFK RPGGGAAAAH RSDHAAFELV  180
FSKPAAAMAV DVIRQAQPLN WAPGALSHES ASHDAAPPES EGHSNDTADT VDGSHVSQSE  240
PEPRATSAAT EVHDAGLDLT LGLPPPPPPV QKTEPADSDG GSQQQHDHRK EKPVELGLAI  300
STKVAAQ*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154343190.0
Expression AtlasQ9LG92-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g03890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g03890
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0025380.0AP002538.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408F06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644470.10.0LOB domain-containing protein 40
SwissprotQ9M8864e-72LBD41_ARATH; LOB domain-containing protein 41
TrEMBLQ9LG920.0Q9LG92_ORYSJ; Os01g0129600 protein
STRINGOGLUM01G02100.10.0(Oryza glumipatula)
STRINGONIVA01G02110.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-69LOB domain-containing protein 41