PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g02110.1
Common NameLOC4326144, Os01g0111500, OSNPB_010111500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 296aa    MW: 30672.4 Da    PI: 7.834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g02110.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09212255755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ + RR+ri +++  L++l+P+      +K++ +++LekA++Y+k Lq
  LOC_Os01g02110.1 212 AAAKVRRERISERLKVLQDLVPNG-----TKVDLVTMLEKAINYVKFLQ 255
                       67799*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-14203265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-12205259No hitNo description
PROSITE profilePS5088814.983205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-12206263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6212255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MMAAQASSKR GMLLPREAVL YDDEPSMPLE ILGYHGNGVG GGGCVDADYY YSWSGSSSSS  60
SSSVLSFDQA AVGGSGGGCA RQLAFHPGGD DDDCAMWMDA AAGAMVENTS VVAGGGNNYC  120
HRLQFHGGAA GFGLASPGSS VVDNGLEIHE SNVSKPPPPA AKKRACPSGE ARAAGKKQCR  180
KGSKPNKAAS ASSPSPSPSP SPSPNKEQPQ SAAAKVRRER ISERLKVLQD LVPNGTKVDL  240
VTMLEKAINY VKFLQLQVKV LATDEFWPAQ GGKAPELSQV KDALDAILSS QHPNK*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329937960.0
Expression AtlasQ0JRA9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g02110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g02110
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085870.0AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643698.10.0transcription factor bHLH83
TrEMBLQ0JRA90.0Q0JRA9_ORYSJ; BHLH transcription factor
STRINGOS01T0111500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-46ROOT HAIR DEFECTIVE6