PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g01870.1
Common NameLOC4326163, Os01g0108600, OSNPB_010108600, P0482C06.23-1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 225aa    MW: 24129.2 Da    PI: 9.9832
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g01870.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.8e-0940108455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...................TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.as................kapskKlsKaeiLekAveYIksLq 55 
                         + +E++RR +++    +L +l+P  a+                + +++ ++  + Le+A  YIk+L+
  LOC_Os01g01870.1  40 ERKDVEKNRRLHMKGLCLKLSSLIPAaAPrrhhhhystsssssppSSTKEAVTQLDHLEQAAAYIKQLK 108
                       56899*********************555**************76666666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.52836107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1138121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-938120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-640107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.003242113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0005737Cellular Componentcytoplasm
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKSRKNSTTS TKAAGSCHTS SSGGGGGGGN CYSSSSSKME RKDVEKNRRL HMKGLCLKLS  60
SLIPAAAPRR HHHHYSTSSS SSPPSSTKEA VTQLDHLEQA AAYIKQLKGR IDELKKRKQQ  120
AAALTTSTSN GGGGGMPVVE VRCQDGTLDV VVVSEAIREE RERAVRLHEV IGVLEEEGAE  180
VVNASFSVVG DKIFYTLHSQ ALCSRIGLDA SRVSHRLRNL LLQY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.300440.0flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166363970.0
Expression AtlasQ8W0N9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g01870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g01870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094320.0AK109432.2 Oryza sativa Japonica Group cDNA clone:006-308-A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622948.11e-163transcription factor bHLH168
TrEMBLB8ACU81e-162B8ACU8_ORYSI; Uncharacterized protein
TrEMBLQ8W0N91e-162Q8W0N9_ORYSJ; Os01g0108600 protein
STRINGOS01T0108600-021e-162(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.18e-18bHLH family protein