PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g01840.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 363aa    MW: 38211.2 Da    PI: 9.4336
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g01840.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.7e-083689554
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C......TTS-STCHHHHHHHHHHHHHH CS
               HLH  5 hnerErrRRdriNsafeeLrellPk.as...kapskKlsKaeiLekAveYIksL 54
                       +e+ErrRR++++    +L +l+Pk  +   k ++   +    L +A  YIk+L
  LOC_Os01g01840.1 36 RKEMERRRRQDMKGLCVKLASLIPKeHCsmsKMQAASRTQLGSLDEAAAYIKKL 89
                      579**********************6669*988889999*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-925103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.2013189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-1135102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-53789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-53795IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDQEKADGGG RRRRSRATSS SGSGASSTAA AAAAERKEME RRRRQDMKGL CVKLASLIPK  60
EHCSMSKMQA ASRTQLGSLD EAAAYIKKLK ERVDELHHKR SMMSITSSRC RSGGGGGPAA  120
AAGQSTSGGG GGEEEEEDMT RTTAAAAVVE VRQHVQEGSL ISLDVVLICS AARPVKFHDV  180
ITVLEEEGAD IISANFSLAA HNFYYTIYSR AFSSRIGIEA SRISERLRAL YTALATWSKD  240
TYIAPTSKFG VGSGVELSSP WVPVWSDAAA GGGGGDARSE DRWMNRRKRL VPCGGGGGYI  300
VVGNREKPAP CGGASCFVVG VRDVTVLMNR QKKLAPCGSV SGFVIGVREV AAPFLETAAA  360
AS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.103000.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g01840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g01840
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028450.0AP002845.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647775.11e-163transcription factor bHLH167 isoform X1
RefseqXP_015647782.11e-163transcription factor bHLH167 isoform X2
RefseqXP_015647790.11e-163transcription factor bHLH167 isoform X3
RefseqXP_015647799.11e-163transcription factor bHLH167 isoform X3
TrEMBLA0A0E0MQF01e-178A0A0E0MQF0_ORYRU; Uncharacterized protein
STRINGORUFI01G00600.11e-179(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.13e-11bHLH family protein